Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0306
         (451 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef...    83   1e-17
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef...    83   1e-17
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef...    83   1e-17
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    40   2e-04
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    32   0.047
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    27   1.8  
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2...    26   2.3  
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr...    25   5.4  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   5.4  
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc...    25   5.4  
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po...    25   7.1  
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo...    24   9.4  

>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
           Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 460

 Score = 83.4 bits (197), Expect = 1e-17
 Identities = 37/48 (77%), Positives = 43/48 (89%)
 Frame = +3

Query: 6   IKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 149
           +KSGDA I  +VPSKP+CVE+F ++ PLGRFAVRDMRQTVAVGVIKAV
Sbjct: 392 VKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAV 439


>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
           Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 83.4 bits (197), Expect = 1e-17
 Identities = 37/48 (77%), Positives = 43/48 (89%)
 Frame = +3

Query: 6   IKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 149
           +KSGDA I  +VPSKP+CVE+F ++ PLGRFAVRDMRQTVAVGVIKAV
Sbjct: 392 VKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAV 439


>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
           Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 83.4 bits (197), Expect = 1e-17
 Identities = 37/48 (77%), Positives = 43/48 (89%)
 Frame = +3

Query: 6   IKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 149
           +KSGDA I  +VPSKP+CVE+F ++ PLGRFAVRDMRQTVAVGVIKAV
Sbjct: 392 VKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAV 439


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 39.9 bits (89), Expect = 2e-04
 Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
 Frame = +3

Query: 15  GDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG-VIKAVN 152
           G   I  L    P+C+E F+++  +GRF +RD   TVAVG V+K ++
Sbjct: 616 GMKIIAELETQTPVCMERFEDYQYMGRFTLRDQGTTVAVGKVVKILD 662


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 31.9 bits (69), Expect = 0.047
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +3

Query: 51  PLCVESFQEFPPLGRFAVRDMRQTVAVGVIK 143
           PLC+   +E P LGRF +R    TVA G++K
Sbjct: 561 PLCLA--EECPALGRFILRRSGDTVAAGIVK 589


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 18/48 (37%), Positives = 19/48 (39%)
 Frame = +1

Query: 226 C*QHNFSYNWILHSPKGVSKEKRATNSFLFYIFYKACNVTLFYNLYKV 369
           C Q   SY W      G S E     S+   IFY       FYNL KV
Sbjct: 752 CIQKFESYGW------GASSEMECYFSYCSLIFYYQATTLQFYNLPKV 793


>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = -1

Query: 421 IYTLVCSHNKMFQIYYV*PY-INYKIMLHYKPCKKYRKGMSL*PFFPSKHLSVNEVSSCM 245
           ++TL+ SHN  + ++Y   Y +  + +L+ K   ++ + + L  F  S HL    ++S +
Sbjct: 290 LFTLMISHNLDYPLFYPKLYALLDRNLLYLKTRSRFFRLLDL--FLSSTHLPATLIASFI 347

Query: 244 KNCA 233
           K  A
Sbjct: 348 KRLA 351


>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 568

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 12/50 (24%), Positives = 27/50 (54%)
 Frame = -1

Query: 343 LHYKPCKKYRKGMSL*PFFPSKHLSVNEVSSCMKNCAVNSSSYFLPLVAF 194
           ++YKP  +    MS  P++PS  ++ ++++S  +      +  F P++ F
Sbjct: 121 VNYKPGMRVLTKMSGFPWWPSMVVTESKMTSVARKSKPKRAGTFYPVIFF 170


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -1

Query: 208 PLVAFSAALVTLPPPASLKLTALMTPTATVCLMSRTA 98
           P  + ++   T+PP  S+  T  + PT ++   + TA
Sbjct: 73  PSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTA 109


>SPBC18H10.04c |sce3|tif48|translation initiation factor
           eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -1

Query: 181 VTLPPPASLKLTALMTPTATVCLMSRTAKRPRGGNSWKDST 59
           + L P +S  +    TP+AT    S+  + P GG    D+T
Sbjct: 244 LNLKPRSSSNVNTEATPSATTTTSSKPKRDPFGGAKPVDNT 284


>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 521

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = -1

Query: 340 HYKPCKKYRKGMSL*PFFPSKHLSVNEVSSCMKNCAVNSSSYFLPLVAFS 191
           HY+    ++ G++L  + PS  L    V     +  +NS  Y   + +FS
Sbjct: 173 HYQALPDFQFGITLKEYVPSSMLPYKGVLGLAASTEINSIDYSDSISSFS 222


>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
           es pombe|chr 2|||Manual
          Length = 372

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = -1

Query: 364 YINYKIMLHYKPCKKYRKGMSL*PFFPSKHLSVNEVSSCMKNCAVNSSSYF 212
           Y N  + + +KP K + K +     FP  + + N +   + N A NS+  F
Sbjct: 257 YFNAGLFV-FKPLKAHYKRLMALARFPKLYDNANMMEQSLLNFAYNSAGAF 306


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,693,750
Number of Sequences: 5004
Number of extensions: 29350
Number of successful extensions: 95
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)