Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0306
(451 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 79 2e-15
03_01_0547 + 4093196-4093657,4094267-4095148 79 2e-15
03_01_0544 + 4082528-4082989,4083585-4084466 79 2e-15
03_01_0543 + 4076981-4077442,4078145-4079026 79 2e-15
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 38 0.005
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 38 0.005
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 38 0.005
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299... 36 0.020
11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903 29 2.3
01_06_0191 - 27334412-27335155 28 4.0
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581... 27 5.3
06_03_1067 - 27326167-27326295,27326572-27326656,27326993-273270... 27 7.0
09_04_0400 + 17296414-17296854,17299212-17299403 27 9.2
04_04_1677 + 35306232-35306328,35306697-35307248,35307324-353076... 27 9.2
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 79.0 bits (186), Expect = 2e-15
Identities = 34/48 (70%), Positives = 43/48 (89%)
Frame = +3
Query: 6 IKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 149
+K+GDA +V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 382 LKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNV 429
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 79.0 bits (186), Expect = 2e-15
Identities = 34/48 (70%), Positives = 43/48 (89%)
Frame = +3
Query: 6 IKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 149
+K+GDA +V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 382 LKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNV 429
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 79.0 bits (186), Expect = 2e-15
Identities = 34/48 (70%), Positives = 43/48 (89%)
Frame = +3
Query: 6 IKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 149
+K+GDA +V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 382 LKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNV 429
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 79.0 bits (186), Expect = 2e-15
Identities = 34/48 (70%), Positives = 43/48 (89%)
Frame = +3
Query: 6 IKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 149
+K+GDA +V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 382 LKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNV 429
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 37.5 bits (83), Expect = 0.005
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +3
Query: 6 IKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 149
+ S A++ + K +CVE F LGR +R T+AVG++ V
Sbjct: 603 LTSRQTAVIEVKLEKEVCVEEFSNLKALGRVFLRSQGNTIAVGIVSRV 650
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 37.5 bits (83), Expect = 0.005
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +3
Query: 6 IKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 140
+KS A+V + P+CV+ F + LGR +R T+AVGV+
Sbjct: 627 LKSKQNAVVQVTLDAPVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 37.5 bits (83), Expect = 0.005
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +3
Query: 6 IKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 140
+KS A+V + P+CV+ F + LGR +R T+AVGV+
Sbjct: 627 LKSKQNAVVQVTLDAPVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671
>04_03_0107 +
11328267-11328276,11329059-11329170,11329862-11329907,
11330185-11330256,11332292-11332303,11332880-11332942,
11333038-11333192,11333303-11333367,11334645-11334795,
11335230-11335335,11335440-11335575,11336310-11336374,
11337003-11337188,11337298-11337399
Length = 426
Score = 35.5 bits (78), Expect = 0.020
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +3
Query: 6 IKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 107
+K+G + + + +C+E+F +FP LGRF +R
Sbjct: 382 VKNGAVVVCRIQVNNLICIENFSDFPQLGRFTLR 415
>11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903
Length = 1135
Score = 28.7 bits (61), Expect = 2.3
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -1
Query: 358 NYKIMLHYKPCKKYRKGMSL*P-FFPSK 278
N M PCKK +KGM++ P FF SK
Sbjct: 657 NVNKMSKLNPCKKQKKGMNILPKFFTSK 684
>01_06_0191 - 27334412-27335155
Length = 247
Score = 27.9 bits (59), Expect = 4.0
Identities = 25/85 (29%), Positives = 38/85 (44%)
Frame = -1
Query: 271 SVNEVSSCMKNCAVNSSSYFLPLVAFSAALVTLPPPASLKLTALMTPTATVCLMSRTAKR 92
+VN + ++ N+ S PL +S V LP +L + P A + TAK
Sbjct: 150 NVNVSTGVVEVTVTNALSAVKPLAVYSVDKVLLP----FELFGVKAPAAAPT--ASTAKP 203
Query: 91 PRGGNSWKDSTHRGLEGTKLTMAAS 17
+GG++ S G E + T AAS
Sbjct: 204 KKGGSTEAASGPAGAEDAEPTGAAS 228
>01_06_0575 -
30357556-30357582,30357698-30357944,30358039-30358161,
30358275-30358301,30358475-30358633,30359764-30359948,
30360225-30360293,30360432-30362354,30363018-30363339,
30363506-30363543
Length = 1039
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 142 LMTPTATVCLMSRTAKRPRGGNSWKDST 59
LM T +VC S+ + P G W DST
Sbjct: 624 LMGKTVSVCERSKEHRVPTMGKGWSDST 651
>06_03_1067 -
27326167-27326295,27326572-27326656,27326993-27327033,
27327274-27327333,27327843-27327962,27328842-27329114,
27329186-27329257,27329798-27329860,27329957-27330139,
27330544-27330660,27330734-27332683,27332770-27332907,
27333003-27333284,27334650-27335522
Length = 1461
Score = 27.1 bits (57), Expect = 7.0
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -1
Query: 208 PLVAFSAALVTLPPPA-SLKLTALMTPTATVCLMSRTAK-RPRGGNSW 71
P A L +L PP + T+L+TP A L+S + R RG +S+
Sbjct: 40 PRAAILRWLASLSPPCRAAAATSLLTPAAAAALLSMLRRLRARGHSSF 87
>09_04_0400 + 17296414-17296854,17299212-17299403
Length = 210
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -1
Query: 226 SSSYFLPLVAFSAALVTLPPPASLKLTALMTP 131
SSS+ P ++FS+ PPP + + A+ P
Sbjct: 16 SSSFMAPRISFSSDFALEPPPPAQQQPAVRAP 47
>04_04_1677 +
35306232-35306328,35306697-35307248,35307324-35307608,
35308035-35308296,35308378-35308430,35308520-35308587,
35310331-35310420,35310502-35310586,35310822-35311254,
35312872-35313439,35313527-35314000
Length = 988
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = +1
Query: 4 PSSLEMQPLSTWYLPSLYV*SPSRNSH 84
PSS P S P YV SPSR+SH
Sbjct: 687 PSSPPRSPTSRGGRPVYYVQSPSRDSH 713
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,882,339
Number of Sequences: 37544
Number of extensions: 191363
Number of successful extensions: 626
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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