Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0306
         (451 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51994-7|AAO21384.1|  429|Caenorhabditis elegans Elongation fact...    85   3e-17
U51994-6|AAA96068.1|  463|Caenorhabditis elegans Elongation fact...    85   3e-17
U40935-2|AAA81688.1|  463|Caenorhabditis elegans Elongation fact...    85   3e-17
Z92835-1|CAB07395.2|  532|Caenorhabditis elegans Hypothetical pr...    44   5e-05
Z81098-7|CAI79193.2|  592|Caenorhabditis elegans Hypothetical pr...    30   0.68 
Z81098-6|CAB03180.3|  610|Caenorhabditis elegans Hypothetical pr...    30   0.68 
Z19158-2|CAA79571.3|  262|Caenorhabditis elegans Hypothetical pr...    29   1.6  
AL033514-38|CAA22111.2|  341|Caenorhabditis elegans Hypothetical...    29   1.6  
Z81142-6|CAB03508.1|  344|Caenorhabditis elegans Hypothetical pr...    27   6.3  
AF036700-1|AAB88364.1|  258|Caenorhabditis elegans Hypothetical ...    27   6.3  
Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical pr...    27   8.3  
AL023837-1|CAA19499.1|  718|Caenorhabditis elegans Hypothetical ...    27   8.3  
AC024791-32|AAY55887.1|  212|Caenorhabditis elegans Hypothetical...    27   8.3  

>U51994-7|AAO21384.1|  429|Caenorhabditis elegans Elongation factor
           protein 4, isoformd protein.
          Length = 429

 Score = 84.6 bits (200), Expect = 3e-17
 Identities = 38/48 (79%), Positives = 44/48 (91%)
 Frame = +3

Query: 6   IKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 149
           +KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 360 LKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSV 407


>U51994-6|AAA96068.1|  463|Caenorhabditis elegans Elongation factor
           protein 4, isoforma protein.
          Length = 463

 Score = 84.6 bits (200), Expect = 3e-17
 Identities = 38/48 (79%), Positives = 44/48 (91%)
 Frame = +3

Query: 6   IKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 149
           +KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 394 LKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSV 441


>U40935-2|AAA81688.1|  463|Caenorhabditis elegans Elongation factor
           protein 3 protein.
          Length = 463

 Score = 84.6 bits (200), Expect = 3e-17
 Identities = 38/48 (79%), Positives = 44/48 (91%)
 Frame = +3

Query: 6   IKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 149
           +KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 394 LKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSV 441


>Z92835-1|CAB07395.2|  532|Caenorhabditis elegans Hypothetical
           protein H19N07.1 protein.
          Length = 532

 Score = 44.0 bits (99), Expect = 5e-05
 Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
 Frame = +3

Query: 6   IKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG-VIKAV 149
           +K  +  I+ L   +P  +E F+E+P LGRF +RD  +T+A+G V+K V
Sbjct: 483 VKQDEKCIMRLESPEPFVLEPFKEYPYLGRFTLRDEGKTIAIGKVLKVV 531


>Z81098-7|CAI79193.2|  592|Caenorhabditis elegans Hypothetical
           protein K07A12.4b protein.
          Length = 592

 Score = 30.3 bits (65), Expect = 0.68
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +3

Query: 6   IKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 149
           I  G +A+V +     + +E+F     LGR   R    T+A G+++ V
Sbjct: 541 IAKGASAVVEIETEYDIAIETFTSCRALGRVTFRAGGNTIAAGIVEKV 588


>Z81098-6|CAB03180.3|  610|Caenorhabditis elegans Hypothetical
           protein K07A12.4a protein.
          Length = 610

 Score = 30.3 bits (65), Expect = 0.68
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +3

Query: 6   IKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 149
           I  G +A+V +     + +E+F     LGR   R    T+A G+++ V
Sbjct: 559 IAKGASAVVEIETEYDIAIETFTSCRALGRVTFRAGGNTIAAGIVEKV 606


>Z19158-2|CAA79571.3|  262|Caenorhabditis elegans Hypothetical
           protein T23G5.3 protein.
          Length = 262

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 20/51 (39%), Positives = 25/51 (49%)
 Frame = -1

Query: 211 LPLVAFSAALVTLPPPASLKLTALMTPTATVCLMSRTAKRPRGGNSWKDST 59
           +P+V  +  L   PPP    L +LM P  TV +  R  K P G NS K  T
Sbjct: 129 VPIVPRNLLLSKPPPPPPPPLPSLMQPKDTVQIPMR--KPPTGRNSKKIKT 177


>AL033514-38|CAA22111.2|  341|Caenorhabditis elegans Hypothetical
           protein Y75B8A.33 protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +1

Query: 289 KRATNSFLFYIFYKACNVTLFYNLYKVIHNISETFC 396
           KR  NS++F I+   C +  F   Y++   +   +C
Sbjct: 262 KRDVNSYVFVIWGVVCQILFFLTTYRIAELVVRIYC 297


>Z81142-6|CAB03508.1|  344|Caenorhabditis elegans Hypothetical
           protein ZK1037.9 protein.
          Length = 344

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = -1

Query: 274 LSVNEVSSCMKNCAVNSSSYFLPLVAFSAALVTLPPPASLKLTALMTPTATVCLMS 107
           L+V+     +K  A  +S++ + ++AF  ALV +  P S ++  L TP     ++S
Sbjct: 109 LAVDIAFEIVKKTAQRASTWLILMIAFIRALV-IRYPMSSRIEKLTTPKVAFIIIS 163


>AF036700-1|AAB88364.1|  258|Caenorhabditis elegans Hypothetical
           protein M04G7.1 protein.
          Length = 258

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -1

Query: 151 LTALMTP-TATVCLMSRTAKRPRGGNSWKDSTHRG 50
           + AL  P T ++CL +   K P  GN+  D T RG
Sbjct: 174 MMALYCPRTCSLCLWAAATKIPNCGNTLPDCTTRG 208


>Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical
           protein C09G5.2 protein.
          Length = 476

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 283 SKHLSVNEVSSCMKNCAVNSSSYFLPLVAFSAALVTLPP 167
           S  + V  + SC     ++SS YF P+V++  A + L P
Sbjct: 336 STDIDVFVLLSCPFGVVLDSSDYFRPVVSYFEAEIALNP 374


>AL023837-1|CAA19499.1|  718|Caenorhabditis elegans Hypothetical
           protein Y37H2C.1 protein.
          Length = 718

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 251 TGYFIHRKVFRRKKGLQTHSF 313
           TGYF ++  + R  GLQ+H +
Sbjct: 523 TGYFAYKYFYERPSGLQSHQW 543


>AC024791-32|AAY55887.1|  212|Caenorhabditis elegans Hypothetical
           protein Y47G6A.31 protein.
          Length = 212

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 349 FYNLYKVIHNISETFCYDC 405
           F +L K++ N   TFCY C
Sbjct: 44  FQHLPKLLENCGHTFCYSC 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,395,955
Number of Sequences: 27780
Number of extensions: 168690
Number of successful extensions: 501
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)