Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0306
         (451 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    97   6e-23
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    94   5e-22
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    27   0.071
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    22   3.6  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    22   3.6  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    22   3.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   6.2  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 97.5 bits (232), Expect = 6e-23
 Identities = 46/51 (90%), Positives = 48/51 (94%)
 Frame = +3

Query: 3   SIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNF 155
           SIKSGDAAIV LVPSKP+C E+FQEFPPLGRFAVRDMRQTVAVGVIKAV F
Sbjct: 393 SIKSGDAAIVMLVPSKPMCAEAFQEFPPLGRFAVRDMRQTVAVGVIKAVTF 443


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 94.3 bits (224), Expect = 5e-22
 Identities = 44/51 (86%), Positives = 48/51 (94%)
 Frame = +3

Query: 3   SIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNF 155
           SIKSGDAAIV L P+KP+CVE+FQEFPPLGRFAVRDMRQTVAVGVIK+V F
Sbjct: 393 SIKSGDAAIVMLQPTKPMCVEAFQEFPPLGRFAVRDMRQTVAVGVIKSVTF 443


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 27.5 bits (58), Expect = 0.071
 Identities = 13/16 (81%), Positives = 14/16 (87%)
 Frame = +3

Query: 3   SIKSGDAAIVNLVPSK 50
           SIKSGDAAIV L P+K
Sbjct: 104 SIKSGDAAIVMLQPTK 119


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 250 CMKNCAVNSSSYFLPLVAFS 191
           C+KN A   SSYF+  + F+
Sbjct: 98  CLKNSADTISSYFVGKMYFN 117


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 250 CMKNCAVNSSSYFLPLVAFS 191
           C+KN A   SSYF+  + F+
Sbjct: 103 CLKNSADTISSYFVGKMYFN 122


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 250 CMKNCAVNSSSYFLPLVAFS 191
           C+KN A   SSYF+  + F+
Sbjct: 103 CLKNSADTISSYFVGKMYFN 122


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +1

Query: 16  EMQPLSTWYLPSL 54
           +  P+  WY+PSL
Sbjct: 589 DKNPVQLWYVPSL 601


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,394
Number of Sequences: 438
Number of extensions: 2193
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)