Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0306
         (451 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ...    79   1e-15
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ...    79   1e-15
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ...    79   1e-15
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ...    79   1e-15
At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-...    74   4e-14
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,...    45   2e-05
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E...    34   0.051
At5g51200.1 68418.m06349 expressed protein                             29   1.9  
At1g55420.1 68414.m06339 DC1 domain-containing protein contains ...    29   1.9  
At3g49610.1 68416.m05422 hypothetical protein contains Pfam prof...    28   3.4  
At1g55380.1 68414.m06334 DC1 domain-containing protein contains ...    28   3.4  
At2g04500.1 68415.m00455 DC1 domain-containing protein contains ...    27   5.9  
At4g02670.1 68417.m00362 zinc finger (C2H2 type) family protein ...    27   7.7  
At1g71970.1 68414.m08319 expressed protein                             27   7.7  
At1g53300.1 68414.m06041 thioredoxin family protein contains Pfa...    27   7.7  

>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
           identical to SWISS-PROT:P13905 elongation factor 1-alpha
           (EF-1-alpha) [Arabidopsis thaliana]
          Length = 449

 Score = 79.4 bits (187), Expect = 1e-15
 Identities = 34/49 (69%), Positives = 44/49 (89%)
 Frame = +3

Query: 6   IKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 152
           +K+GDA +V + P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 382 LKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVD 430


>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
           identical to GB:CAA34456 from [Arabidopsis thaliana]
           (Plant Mol. Biol. 14 (1), 107-110 (1990))
          Length = 449

 Score = 79.4 bits (187), Expect = 1e-15
 Identities = 34/49 (69%), Positives = 44/49 (89%)
 Frame = +3

Query: 6   IKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 152
           +K+GDA +V + P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 382 LKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVD 430


>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
           identical to GB:CAA34456 from [Arabidopsis thaliana]
           (Plant Mol. Biol. 14 (1), 107-110 (1990))
          Length = 449

 Score = 79.4 bits (187), Expect = 1e-15
 Identities = 34/49 (69%), Positives = 44/49 (89%)
 Frame = +3

Query: 6   IKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 152
           +K+GDA +V + P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 382 LKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVD 430


>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
           identical to GB:CAA34456 from [Arabidopsis thaliana]
           (Plant Mol. Biol. 14 (1), 107-110 (1990))
          Length = 449

 Score = 79.4 bits (187), Expect = 1e-15
 Identities = 34/49 (69%), Positives = 44/49 (89%)
 Frame = +3

Query: 6   IKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 152
           +K+GDA +V + P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 382 LKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVD 430


>At1g35550.1 68414.m04414 elongation factor Tu C-terminal
           domain-containing protein similar to SP|P13905
           Elongation factor 1-alpha (EF-1-alpha) {Arabidopsis
           thaliana}; contains Pfam profile PF03143: Elongation
           factor Tu C-terminal domain
          Length = 104

 Score = 74.1 bits (174), Expect = 4e-14
 Identities = 30/48 (62%), Positives = 42/48 (87%)
 Frame = +3

Query: 6   IKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 149
           +K+ +AAI+N+ P+KP+ VE++  +PPLGRFA+RDMRQTV VGVIK+V
Sbjct: 48  LKNSEAAIINMTPTKPMVVEAYSAYPPLGRFAIRDMRQTVGVGVIKSV 95


>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
           putative similar to EF-1-alpha-related GTP-binding
           protein gi|1009232|gb|AAA79032
          Length = 532

 Score = 45.2 bits (102), Expect = 2e-05
 Identities = 17/45 (37%), Positives = 29/45 (64%)
 Frame = +3

Query: 6   IKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 140
           +K+G A +  +  +  +C+E F +FP LGRF +R   +T+AVG +
Sbjct: 478 VKNGAAVVCRIQVTNSICIEKFSDFPQLGRFTLRTEGKTIAVGKV 522


>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
           EF-1-alpha, putative contains similarity to
           SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
           [Aeropyrum pernix]
          Length = 667

 Score = 33.9 bits (74), Expect = 0.051
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = +3

Query: 21  AAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 149
           +A++ +    P+CVE+F E   LGR  +R   +TVA+G +  +
Sbjct: 621 SAMLEVSLQNPVCVETFSESRALGRVFLRSSGRTVAMGKVTRI 663


>At5g51200.1 68418.m06349 expressed protein
          Length = 1808

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = -1

Query: 262  EVSSCMKNCAVNSSSYFLPLVAFSAALVTLPPPASLKLTALMTPTATVCL 113
            EVS+C +  ++++ S  L  +  ++   +  P  SLK+  ++T  A  C+
Sbjct: 1182 EVSACRRISSLDNRSEILYRILDASLSASASPDCSLKMAFVLTQVALTCI 1231


>At1g55420.1 68414.m06339 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 725

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
 Frame = +1

Query: 319 IFYKACN---VTLFYNLYKVIHNI--SETFCYDCKLKC 417
           I+ K C+   V LFY   ++  N   S  FCY C+L+C
Sbjct: 619 IYLKPCHIFKVGLFYKEVEIARNDGNSRLFCYICRLRC 656


>At3g49610.1 68416.m05422 hypothetical protein contains Pfam profile
           PF03754: Domain of unknown function (DUF313)
          Length = 334

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +1

Query: 235 HNFSYNWILHSPKGVSKEKRATNSFLFYIFYKACNVTLFYNLYKVIHNIS 384
           + FS  W L     V K+K++ N  L+Y   +  N  +  N  K   NIS
Sbjct: 268 NQFSKEWSLRFLIWVMKKKKSGNGTLYYTLNRGWNGVVSGNKLKANDNIS 317


>At1g55380.1 68414.m06334 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 661

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
 Frame = +1

Query: 319 IFYKACN---VTLFYNLYKVIHNI--SETFCYDCKLKC 417
           I+ K C+   V L+Y   ++  N   S  FCY C+L+C
Sbjct: 579 IYLKPCHIFKVGLYYKEVEIARNDGNSRLFCYTCELRC 616


>At2g04500.1 68415.m00455 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 495

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +1

Query: 373 HNISETFCYDCKLKCKF 423
           + ++  FC+ C+L+CKF
Sbjct: 444 NGVTRPFCFHCELRCKF 460


>At4g02670.1 68417.m00362 zinc finger (C2H2 type) family protein
           similar to potato PCP1 zinc finger protein, GenBank
           accession number X82328 contains Pfam domain, PF00096:
           Zinc finger, C2H2 type
          Length = 402

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 20/53 (37%), Positives = 26/53 (49%)
 Frame = -1

Query: 295 PFFPSKHLSVNEVSSCMKNCAVNSSSYFLPLVAFSAALVTLPPPASLKLTALM 137
           P F   H   N+ SS +      SS  F+     +AAL T PP A+L  TAL+
Sbjct: 230 PNFQGHHFMFNKSSSLL----FTSSPLFIEPSLSTAALST-PPTAALSATALL 277


>At1g71970.1 68414.m08319 expressed protein
          Length = 225

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 268 VNEVSSCMKNCAVNSSSYFLPLVAFSAALVTLPP 167
           VN   SC + CAV  S  +LP    +A+   L P
Sbjct: 188 VNLYGSCRRTCAVTESIVYLPRARKAASYDNLLP 221


>At1g53300.1 68414.m06041 thioredoxin family protein contains Pfam
           profiles PF00085: Thioredoxin, PF00515: TPR Domain;
           similar to tetratricopeptide repeat protein 2
           (GI:7248701) [Drosophila melanogaster]; similar to DnaJ
           homolog subfamily C member 7 (Tetratricopeptide repeat
           protein 2) (TPR repeat protein 2) (Swiss-Prot:Q99615)
           [Homo sapiens]
          Length = 699

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -1

Query: 241 NCAVNSSSYFLPLVAFSAALVTLPPPASLKLTALMTPTATVC 116
           +   +SSS+  PL++ S++  T P P S    A + PT  +C
Sbjct: 106 SATTSSSSHSQPLLSSSSSSATSPAPTS---PANVLPTGNIC 144


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,817,003
Number of Sequences: 28952
Number of extensions: 152896
Number of successful extensions: 462
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)