Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0305
(581 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomy... 105 4e-24
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo... 27 1.5
SPCC1235.12c |mug146||meiotically upregulated gene Mug46|Schizos... 27 2.6
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 27 2.6
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 26 3.5
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc... 26 4.6
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo... 25 6.1
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S... 25 8.1
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb... 25 8.1
>SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 151
Score = 105 bits (253), Expect = 4e-24
Identities = 47/80 (58%), Positives = 56/80 (70%)
Frame = +1
Query: 256 VVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGSDSVESAKKEIGL 435
V M+WEG VKTGR MLGA+NP DS PGTIRGD I +GRN+ HGSDS+ESA +EI L
Sbjct: 72 VCAMIWEGKQAVKTGRLMLGASNPLDSAPGTIRGDYGIDLGRNVCHGSDSIESANREIKL 131
Query: 436 WFTDKEVVGWTPANENWVYE 495
WF E+ + E W+YE
Sbjct: 132 WFQPSEIQVYDRTIEPWIYE 151
Score = 85.4 bits (202), Expect = 5e-18
Identities = 39/77 (50%), Positives = 56/77 (72%), Gaps = 2/77 (2%)
Frame = +2
Query: 53 ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 232
E+TFI VKPD VQRGL+G II +FE KG+KL LKF+ PS +L+++HY++ +PF+ L
Sbjct: 4 EQTFIAVKPDAVQRGLIGYIISKFELKGYKLRALKFLVPSRDLVEEHYAEHKGKPFYEKL 63
Query: 233 VKYMSSG--LWSLWYGR 277
V +M+SG +W G+
Sbjct: 64 VGFMASGPVCAMIWEGK 80
>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 350
Score = 27.5 bits (58), Expect = 1.5
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = -2
Query: 184 EKFF*WPYE--FQTD*FEAFLFETFNNGAHKTTLYTIRLNHNKSTLTLFRHHEILLTCSI 11
++F W Y+ ++ D L ET N K T+RL H L+LF +L TC +
Sbjct: 283 DQFTDWLYQRWYEKDKLIDTLLETGNFPGPKKLHTTVRLKHRLEILSLF---SVLFTCIV 339
>SPCC1235.12c |mug146||meiotically upregulated gene
Mug46|Schizosaccharomyces pombe|chr 3|||Manual
Length = 311
Score = 26.6 bits (56), Expect = 2.6
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Frame = -3
Query: 456 NFFVRKPEAYFLFSRFNAVRTMDDVTPNLNAEITADSAGLRVSWVSC-AKHLTASLHNIK 280
N FV P R + RT+ TP+L E ++ R+S V C H +S N
Sbjct: 5 NTFVDYPTTQVRKERVHTYRTLTSATPSL--EFFSNENTNRLSEVQCKLTHFLSSSENSS 62
Query: 279 ALPYHRDHS-PELMYF 235
++ R H +L+++
Sbjct: 63 SVRNTRTHKFKQLLHY 78
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 26.6 bits (56), Expect = 2.6
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -1
Query: 266 IGTTVLNSCTLLDQGRKAGMPNRCSVAGEVLLMAIRIS 153
IGT ++N+ T++ QG+ G+ V EVL + I ++
Sbjct: 854 IGTWIVNT-TMIAQGQNRGIVQNFGVQDEVLFLQISLT 890
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 26.2 bits (55), Expect = 3.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 138 KPFFSKRSIMVPTRPRCTPSGLT 70
KPF +KRS ++P RP T L+
Sbjct: 512 KPFVNKRSKVLPLRPSVTHDNLS 534
>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 919
Score = 25.8 bits (54), Expect = 4.6
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -1
Query: 266 IGTTVLNSCTLLDQGRKAGMPNRCSVAGEVLLMAIRIS 153
IGT + N+ T++ QG+ G+ V EVL + I ++
Sbjct: 766 IGTWITNT-TMIAQGQNRGIVQNFGVQDEVLFLEISLT 802
>SPAC1039.07c |||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 25.4 bits (53), Expect = 6.1
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Frame = +1
Query: 277 GLNVVKTGRQMLGATNPADSQP--GTIRGDLCIQVGR--NIIH 393
GL +++ G ++ T+P+ GT+ GD C+++G NI+H
Sbjct: 364 GLGLLQ-GIEIASCTDPSKPSDFLGTVIGDKCLELGMNCNIVH 405
>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1052
Score = 25.0 bits (52), Expect = 8.1
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = -3
Query: 507 KINLLINPVFICRCPAHNFFVRKPEAYFLFSRFNAVRTMDDVTPNLN 367
+I L + ICR P +FFV E L + + + +T + N
Sbjct: 10 RIQLSSRAIQICRIPKVSFFVVLTETEILIYQIRPLTLISKITKSQN 56
>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 574
Score = 25.0 bits (52), Expect = 8.1
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Frame = +1
Query: 259 VPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNI----IHGSDSVESAKKE 426
+ V EG N + GRQ+L T+P + + +G I H SD + + +
Sbjct: 388 ITWVSEGANTMDRGRQLLEVTHPRGRLDAGTMSTMGVGMGYAIASAFAHSSDKIVVVEGD 447
Query: 427 IGLWFTDKEV 456
F+ E+
Sbjct: 448 SAFGFSAMEL 457
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,432,198
Number of Sequences: 5004
Number of extensions: 50247
Number of successful extensions: 148
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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