Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0305
         (581 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-13|CAB02101.1|  153|Caenorhabditis elegans Hypothetical p...   111   3e-25
AC006644-2|AAF39837.1|  118|Caenorhabditis elegans Hypothetical ...    43   1e-04
L14710-6|AAA28079.1|  227|Caenorhabditis elegans Hypothetical pr...    27   7.4  

>Z79754-13|CAB02101.1|  153|Caenorhabditis elegans Hypothetical
           protein F25H2.5 protein.
          Length = 153

 Score =  111 bits (267), Expect = 3e-25
 Identities = 51/81 (62%), Positives = 61/81 (75%), Gaps = 1/81 (1%)
 Frame = +1

Query: 256 VVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGSDSVESAKKEIGL 435
           VV MVW+GL+VVK GR MLGATNP  S PGTIRGD CIQ GRNI HGSD+V+SA +EI  
Sbjct: 73  VVAMVWQGLDVVKQGRSMLGATNPLASAPGTIRGDFCIQTGRNICHGSDAVDSANREIAH 132

Query: 436 WFTDKEVVGW-TPANENWVYE 495
           WF  +E+  + +P   +WVYE
Sbjct: 133 WFKQEEINDYASPFINSWVYE 153



 Score = 93.9 bits (223), Expect = 7e-20
 Identities = 44/76 (57%), Positives = 56/76 (73%), Gaps = 2/76 (2%)
 Frame = +2

Query: 53  ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 232
           ERTFI +KPDGV RGLVG II RFE++G+KLV LK +  S+  L+ HY DL  +PFFP L
Sbjct: 5   ERTFIAIKPDGVHRGLVGKIIARFEERGYKLVALKQMTASKAHLEVHYQDLKDKPFFPSL 64

Query: 233 VKYMSSG--LWSLWYG 274
           ++YMSSG  +  +W G
Sbjct: 65  IEYMSSGPVVAMVWQG 80


>AC006644-2|AAF39837.1|  118|Caenorhabditis elegans Hypothetical
           protein F55A3.6 protein.
          Length = 118

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 26/64 (40%), Positives = 35/64 (54%)
 Frame = +1

Query: 256 VVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGSDSVESAKKEIGL 435
           VV M+WEG +VVK  R +LG       +  +I  DL ++      H SDSV SA +E  L
Sbjct: 48  VVAMLWEGCDVVKRARVILGEELEV-GEFRSIFYDLVVRDTHKGCHCSDSVASANREYVL 106

Query: 436 WFTD 447
           WF +
Sbjct: 107 WFEE 110



 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
 Frame = +2

Query: 212 RPFFPGLVKYMSSG--LWSLWYG 274
           +PFFP L+ YMSSG  +  LW G
Sbjct: 33  KPFFPLLIDYMSSGPVVAMLWEG 55


>L14710-6|AAA28079.1|  227|Caenorhabditis elegans Hypothetical
           protein K02D10.4 protein.
          Length = 227

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 100 CGHHY*TFRKERLQTSRFEIRMAIRRTSP 186
           CGH        R +T +FE R+ ++R+SP
Sbjct: 107 CGHPVEVDDHHRRETKKFENRLTLKRSSP 135


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,456,256
Number of Sequences: 27780
Number of extensions: 285313
Number of successful extensions: 868
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)