Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0304
         (689 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9EMT1 Cluster: AMV118; n=2; Entomopoxvirinae|Rep: AMV1...    36   0.93 
UniRef50_Q4RBR8 Cluster: Chromosome undetermined SCAF20847, whol...    33   5.0  
UniRef50_UPI0000E49FEB Cluster: PREDICTED: similar to axonal tra...    33   8.7  

>UniRef50_Q9EMT1 Cluster: AMV118; n=2; Entomopoxvirinae|Rep: AMV118
           - Amsacta moorei entomopoxvirus (AmEPV)
          Length = 386

 Score = 35.9 bits (79), Expect = 0.93
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +3

Query: 363 TMT*TYVSSYIYITM-NYCRNIPWEMVPQRPMYTQSSLLAIMLRILSELASLCLPETHTS 539
           T+   + + +  +TM N+CR  P ++   R MY+QS    I L++ SEL S+   + +  
Sbjct: 155 TLINNFTTPHCNVTMQNFCRQNPEDLYCYRWMYSQSKTFDIALKLYSELCSIDHTKLYCD 214

Query: 540 Y 542
           Y
Sbjct: 215 Y 215


>UniRef50_Q4RBR8 Cluster: Chromosome undetermined SCAF20847, whole
           genome shotgun sequence; n=2; Tetraodontidae|Rep:
           Chromosome undetermined SCAF20847, whole genome shotgun
           sequence - Tetraodon nigroviridis (Green puffer)
          Length = 240

 Score = 33.5 bits (73), Expect = 5.0
 Identities = 13/36 (36%), Positives = 25/36 (69%)
 Frame = +3

Query: 414 CRNIPWEMVPQRPMYTQSSLLAIMLRILSELASLCL 521
           C+NI  E + +RP+YT   +++++LRI+ E+ +  L
Sbjct: 132 CKNIDQEEILERPIYTVFYIISVLLRIILEVIAFWL 167


>UniRef50_UPI0000E49FEB Cluster: PREDICTED: similar to axonal
           transport of synaptic vesicles; n=3; Strongylocentrotus
           purpuratus|Rep: PREDICTED: similar to axonal transport
           of synaptic vesicles - Strongylocentrotus purpuratus
          Length = 1621

 Score = 32.7 bits (71), Expect = 8.7
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = -1

Query: 446 LWYHLPWDVTTVIHCDVNITTNIGLSHGYLQ*KHXXXXYCSNQKQL--YLGRTLYVNARR 273
           L YHL   +T V   D N+T +I LS  Y+  +H       +Q  L  + GR  Y+N  +
Sbjct: 470 LLYHLKPGITRVGLSDANVTQDIQLSGSYINEEHCIFENKDSQVTLKPFDGRMCYINGSK 529


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 662,760,109
Number of Sequences: 1657284
Number of extensions: 12636895
Number of successful extensions: 29029
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29028
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)