Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0304
         (689 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc...    29   0.48 
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p...    28   1.5  
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    26   4.5  
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    25   7.8  

>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 517

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 381 VSSYIYITMNYCRNIPWEMVPQRPMYTQSSL 473
           V S++YIT+ YC    W   P   +YT  +L
Sbjct: 154 VISFLYITLVYCPQAYWTWAPNGWLYTLGAL 184


>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 360

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
 Frame = +1

Query: 448 DPCILSPACLRSCSGYCRS-----WPHSAYQRRTPLTHGSVKTIYV 570
           DP  + P C+     YCRS      PH  +   TP   G+++T Y+
Sbjct: 87  DPVAVEPGCVCRLCDYCRSGRYNLCPHMEF-AATPPYDGTLRTYYI 131


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 487 SGYCRSWPHSAYQRRTPLTH 546
           +GY R W H AY+ + PL +
Sbjct: 107 AGYHRLWSHRAYKAKKPLEY 126


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +3

Query: 450 PMYTQSSLLAIMLRILSELASLCLPETHTSYAW*RKNHLCARL 578
           P+Y  SS + + + I +E+A+LC  +   SY   R + LC+ L
Sbjct: 422 PLYVDSSRVKVPIDIRNEMAALCFSQI-DSYV--RFSILCSLL 461


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,738,949
Number of Sequences: 5004
Number of extensions: 53641
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)