Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0304
         (689 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52134| Best HMM Match : C1_1 (HMM E-Value=1.8)                      28   6.2  
SB_17421| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_30473| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.2  

>SB_52134| Best HMM Match : C1_1 (HMM E-Value=1.8)
          Length = 154

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = +1

Query: 448 DPCILSPACLRSCS-GYCRSWPHSAYQRRT---PLTHGSVKTI 564
           D CIL   C++SCS GY +   + A Q  T   PLT  +  T+
Sbjct: 73  DDCILHRQCMKSCSTGYRKKRDNRANQLITQSDPLTRQTASTV 115


>SB_17421| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 555

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
 Frame = -1

Query: 659 AFSVFNIITPSGC----WWCCPAFVAHQGCLQTRT*MVFTLPCVRGVRLW 522
           A  V ++ TP GC    WW     +A    +Q RT +++T    +G  LW
Sbjct: 343 ALRVTSLDTPLGCRPLVWWAQLTLLAIAITIQVRTYIIWTFLLRKGSLLW 392


>SB_30473| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 345

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +2

Query: 440 TTTTHVYSVQPACDHAQDTVGAGLTLLTRDAHLLRMVA*KPSMCASANIPDAL 598
           T T+H   +  A   A+  +GA L  + +  H+  +   K  MC S  +P ++
Sbjct: 241 TKTSHENPMMDAQKQAEKVLGASLEGICKVYHVRNVAPKKQMMCVSFKLPSSV 293


>SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1894

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 19/66 (28%), Positives = 26/66 (39%)
 Frame = +2

Query: 440  TTTTHVYSVQPACDHAQDTVGAGLTLLTRDAHLLRMVA*KPSMCASANIPDALQKRGSTT 619
            TT        P+CD         ++ LTR +H       +PS   S   PD LQ+   +T
Sbjct: 1570 TTENQKEIESPSCDEISSEA---ISQLTRTSHQAVATQAEPSSADSITSPDCLQQEQPST 1626

Query: 620  STLKAL 637
            S    L
Sbjct: 1627 SDRSTL 1632


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,293,839
Number of Sequences: 59808
Number of extensions: 428209
Number of successful extensions: 857
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)