Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0304
         (689 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81125-6|CAI79225.1|  234|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z81125-5|CAB03381.2|  398|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AF408760-1|AAO27839.1|  318|Caenorhabditis elegans unknown prote...    29   4.1  
AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...    28   5.5  
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...    28   5.5  
U41039-2|AAX88821.1|  141|Caenorhabditis elegans Saposin-like pr...    27   9.6  

>Z81125-6|CAI79225.1|  234|Caenorhabditis elegans Hypothetical
           protein T22A3.3b protein.
          Length = 234

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = +3

Query: 186 RRNNTYI*VVPAGLRSSLSQTAETSSRSLSPGVYVQC 296
           +R++ Y+  +P    S+++  +  +S  +SPG +V+C
Sbjct: 130 KRSSGYVDYMPTTYNSNVTSNSSAASVPMSPGTWVRC 166


>Z81125-5|CAB03381.2|  398|Caenorhabditis elegans Hypothetical
           protein T22A3.3a protein.
          Length = 398

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = +3

Query: 186 RRNNTYI*VVPAGLRSSLSQTAETSSRSLSPGVYVQC 296
           +R++ Y+  +P    S+++  +  +S  +SPG +V+C
Sbjct: 294 KRSSGYVDYMPTTYNSNVTSNSSAASVPMSPGTWVRC 330


>AF408760-1|AAO27839.1|  318|Caenorhabditis elegans unknown protein
           protein.
          Length = 318

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = +3

Query: 186 RRNNTYI*VVPAGLRSSLSQTAETSSRSLSPGVYVQC 296
           +R++ Y+  +P    S+++  +  +S  +SPG +V+C
Sbjct: 214 KRSSGYVDYMPTTYNSNVTSNSSAASVPMSPGTWVRC 250


>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +2

Query: 491 DTVGAGLTLLTRDAHLLRMVA*KPSMCASANIPDALQKRGSTTSTL 628
           +T  A L L+  D + L +V   P++C   N+P A+ K  ++  T+
Sbjct: 149 ETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTV 194


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +2

Query: 491 DTVGAGLTLLTRDAHLLRMVA*KPSMCASANIPDALQKRGSTTSTL 628
           +T  A L L+  D + L +V   P++C   N+P A+ K  ++  T+
Sbjct: 129 ETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTV 174


>U41039-2|AAX88821.1|  141|Caenorhabditis elegans Saposin-like
           protein family protein22 protein.
          Length = 141

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +1

Query: 163 AIDGVNPTGVTIHTS--ELFRLDCEALCHRLPK 255
           A+ GVN   + +     E+ RLDCEAL H  P+
Sbjct: 60  AVYGVNYDFIQLKKDFIEMIRLDCEALFHERPE 92


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,328,348
Number of Sequences: 27780
Number of extensions: 306334
Number of successful extensions: 727
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)