Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0304
         (689 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   2.7  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   3.6  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   8.4  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 196 IHTSELFRLDCEALCHRLPKL 258
           +H   + R +CE LC+RL ++
Sbjct: 237 MHQQIMARYNCERLCNRLGRV 257


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 680 SKIFYCIAFSVFNIITPSGCW 618
           S+I + +AF +FNI+  S  W
Sbjct: 448 SRIVFPVAFIIFNILYWSFIW 468


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 154 DYSAIDGVNPTGVTIHTSEL 213
           D+S++   + +GVT+ TS L
Sbjct: 222 DHSSVQSSSDSGVTMSTSRL 241


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,683
Number of Sequences: 438
Number of extensions: 4526
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)