Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0304
         (689 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g50780.1 68416.m05561 expressed protein                             28   6.7  
At3g16320.1 68416.m02061 cell division cycle family protein / CD...    27   8.9  

>At3g50780.1 68416.m05561 expressed protein 
          Length = 520

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 638 ITPSGCWWCCPAFVAHQGCLQT 573
           +TP G +WCCP+ VA Q  L++
Sbjct: 23  VTPEG-FWCCPSPVAFQKTLKS 43


>At3g16320.1 68416.m02061 cell division cycle family protein / CDC
           family protein similar to SP|P30260|CC27_HUMAN Protein
           CDC27Hs (Cell division cycle protein 27 homolog) Homo
           sapiens, C-terminus similar to C-term of cell division
           control protein 27 SP:P38042 (Saccharomyces cerevisiae);
           contains Pfam profile PF00515 TPR Domain
          Length = 727

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +1

Query: 205 SELFRLDCEALCHRLPKLAAVHYLLAFTYNVRPR*SC 315
           +E   L CE     +P  AA HYLL   Y    R +C
Sbjct: 83  AEAALLPCEDYAEEVPGGAAGHYLLGLIYRYSGRKNC 119


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,319,375
Number of Sequences: 28952
Number of extensions: 281113
Number of successful extensions: 554
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)