Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0302
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|...    28   1.2  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    26   4.8  
SPAC19A8.14 |||aminoacyl-tRNA hydrolase |Schizosaccharomyces pom...    26   6.3  
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ...    25   8.4  
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    25   8.4  

>SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 381

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -2

Query: 211 SSKMGVSTSVCGRTTHNPGTVEVSGFLGASKTLGPGDTDLDV 86
           +SK+G+  +   R   +   + +  FL  S ++GPG T+LD+
Sbjct: 320 TSKIGLLKAYPNRVLMDKQGIHIGLFLEESPSIGPGMTNLDI 361


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +3

Query: 84  TTSRSVSPGPRVLDAPRKPLTSTVPGLWVVLPQTLVLTPILL 209
           T+ R V    ++L + RK   + +    +VLP+ LVL PIL+
Sbjct: 650 TSVRLVEGVVKILSSYRKVAANRLTPGQLVLPKNLVLLPILI 691


>SPAC19A8.14 |||aminoacyl-tRNA hydrolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 205

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -2

Query: 196 VSTSVCGRTTHNPGTVEVSGFLGASKTLGPGDTDLDVVVEFDG 68
           +S  +C R  H+ G  +++   G++  LG G   + V+ E  G
Sbjct: 160 MSLGLCARVIHDAGRTQIAS--GSATVLGIGPGPVSVINEVTG 200


>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
           Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 868

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 462 WLHQQHPAHQPSQWKHN 512
           W+  QHP     +WKHN
Sbjct: 413 WMDIQHPQKPLLEWKHN 429


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 463 GFTNNIQRINLASGSTTLLVLGPGLPA 543
           G  N +  I LA  +  LLV+GPG+ A
Sbjct: 491 GGNNRLAGIMLALATVALLVIGPGIIA 517


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,587,089
Number of Sequences: 5004
Number of extensions: 46580
Number of successful extensions: 169
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)