Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0302
(728 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0564 - 9477118-9477200,9477617-9477687,9477799-9477944,947... 31 1.2
09_04_0259 - 16182190-16182360,16183185-16183262,16184431-161845... 29 2.9
02_02_0135 + 7096911-7098440 29 2.9
12_01_0372 + 2867471-2867775,2867805-2867901,2868539-2868916 29 3.8
11_06_0156 + 20748472-20748951 29 3.8
03_01_0389 + 3021849-3022136,3022237-3022753,3022835-3022988,302... 29 3.8
10_02_0061 - 4812903-4812940,4813140-4813536 29 5.0
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 29 5.0
08_01_0786 - 7606984-7607037,7607235-7607379,7608103-7608163,760... 28 6.6
04_03_0625 + 18126856-18127444,18127561-18127725,18127827-18127834 28 6.6
08_02_1480 + 27401923-27402158,27402847-27402982,27403119-274031... 28 8.7
07_03_0387 - 17536026-17536636,17536772-17537150 28 8.7
02_05_0787 - 31742685-31742702,31742703-31742744,31742993-317430... 28 8.7
>03_02_0564 -
9477118-9477200,9477617-9477687,9477799-9477944,
9478051-9478128,9478284-9478388,9478647-9478769,
9479085-9479171,9479272-9479352,9479443-9479512,
9479604-9479662,9479763-9479831,9479912-9479962,
9480063-9480107,9480203-9480276,9480544-9480667,
9480773-9480940
Length = 477
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 573 LPKQHRRSFRSRQPRPKYQQSCASTG*VDALDVV 472
LP HR SFR+ PRP A+ G + A ++
Sbjct: 15 LPHHHRSSFRTSSPRPSRMVCAAAEGFISAAPIL 48
>09_04_0259 -
16182190-16182360,16183185-16183262,16184431-16184586,
16184913-16185092,16185875-16186027
Length = 245
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +3
Query: 60 QKSPSNSTTTSRSVSPGPRVLDAPRKPLTSTVPG 161
++ PS T T+ V PGP V D RKPL+ T PG
Sbjct: 182 KEKPSIGTVTA--VGPGPLVEDGSRKPLSIT-PG 212
>02_02_0135 + 7096911-7098440
Length = 509
Score = 29.5 bits (63), Expect = 2.9
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = +1
Query: 247 LRSSLLTNTRSVTAAHCWRTRRAQARQFTLALGTANIFSGGTRVTTSNVQMHGSYN--MD 420
LRS LLT + V++ R R Q +Q + +N+ T SN QM YN +D
Sbjct: 323 LRSELLTMLQLVSSPFSTRLPRHQFKQISYYHFESNLKPSFDDDTNSNAQMDQKYNQCLD 382
Query: 421 TLHNDVAIIN 450
+ + A N
Sbjct: 383 EIQSTTARFN 392
>12_01_0372 + 2867471-2867775,2867805-2867901,2868539-2868916
Length = 259
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 396 LDIGGGDPGASGEDVSCAKSEGELTSLGSPG 304
+++ G D S SC S+G ++ GSPG
Sbjct: 169 MEVDGNDDSDSSSPTSCVSSDGRSSAGGSPG 199
>11_06_0156 + 20748472-20748951
Length = 159
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -3
Query: 579 CWLPKQHRRSFRSRQPRPKYQQSCASTG*VDALDV 475
CWLP+ RRS R R R K+ G +D+
Sbjct: 6 CWLPRACRRSMRHRSCRTKFAWDGERDGMAATVDI 40
>03_01_0389 +
3021849-3022136,3022237-3022753,3022835-3022988,
3023076-3023166,3024556-3024627,3026366-3026689
Length = 481
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = +3
Query: 54 SWQKSPSNSTTTSRSVSPGPRVLDAPRKPLTSTVPGLWVVLPQTLVLTPI 203
+W K P N V+PG ++DA P +PGL P TL TP+
Sbjct: 36 AW-KRPGNGAAVPVVVAPGSPIMDADSWP---ALPGLASPPPTTLTPTPM 81
>10_02_0061 - 4812903-4812940,4813140-4813536
Length = 144
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +3
Query: 36 WRWRPWSW---QKSPSNSTTTSRSVSPGPRVLDAPRKP 140
WRWR W W + ++ST S++ G R+L R P
Sbjct: 41 WRWRQWWWLEATRRANSSTAVGGSMAVG-RLLPRSRSP 77
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -1
Query: 248 RWKFCHSSVRSQVQQDGGEHQRLRQNHPQSW 156
R + HS GG HQR R +HP +W
Sbjct: 543 RHRHGHSHGDHHHHYHGGHHQRRRHHHPPAW 573
>08_01_0786 -
7606984-7607037,7607235-7607379,7608103-7608163,
7608273-7608465
Length = 150
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -3
Query: 252 PQMEVLPFVSAITSPARWG*APAFAAEPPTILV 154
P LPF S + + AR G APA +A P LV
Sbjct: 11 PARSALPFRSRVAAAARPGRAPALSAAPGRRLV 43
>04_03_0625 + 18126856-18127444,18127561-18127725,18127827-18127834
Length = 253
Score = 28.3 bits (60), Expect = 6.6
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = -2
Query: 268 WSVRNSADGSSAIRQCDHKSSKMGVSTSVCGRTTHNPGTV--EVSGFLGASKTLGPGDTD 95
W+V+N+++ A Q DH S S SVC ++ PG + G+ G + L G D
Sbjct: 141 WAVQNASNCVEA--QKDHDSYACISSNSVCVNSSSGPGYICNCTHGYQG-NPYLLHGCQD 197
Query: 94 LDVVVEFDGLFCH 56
+D E + C+
Sbjct: 198 IDECEEHENYHCY 210
>08_02_1480 +
27401923-27402158,27402847-27402982,27403119-27403168,
27403810-27403813,27404394-27404494,27405084-27406305
Length = 582
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 326 SSPSLLAQLTSSPEAPGSPPP 388
SS S + +SSP AP SPPP
Sbjct: 7 SSTSSSSSASSSPRAPSSPPP 27
>07_03_0387 - 17536026-17536636,17536772-17537150
Length = 329
Score = 27.9 bits (59), Expect = 8.7
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = +1
Query: 487 INLASGSTTLLVLGPGLPASEGPPMLLREPTTNKNAK*ASRSLPTPSAPA--RLETM*SL 660
++ SG+T + P P S P L R T A LP P AP R+ T+ +
Sbjct: 145 LSATSGTTMIFATAPA-PVSTPTPALPRSGTVLGAAPPLPLPLPLPPAPVFPRVSTVLGV 203
Query: 661 PPP 669
PP
Sbjct: 204 APP 206
>02_05_0787 -
31742685-31742702,31742703-31742744,31742993-31743022,
31743337-31744183,31744431-31744560,31744682-31744814
Length = 399
Score = 27.9 bits (59), Expect = 8.7
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +1
Query: 388 NVQMHGSYNMDTLHNDVAIINHN--HVGFTNNIQRINLASGSTTLLVLGPG 534
N+QMHGS D + NHN + T + IN A+ +TT +L G
Sbjct: 275 NIQMHGSSLFDQSAAIINDANHNQDYAASTGEREIINGATKTTTTTLLPEG 325
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,003,536
Number of Sequences: 37544
Number of extensions: 411044
Number of successful extensions: 1970
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1969
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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