Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0302
         (728 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    30   1.9  
Z35719-1|CAA84800.1|  296|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like...    29   2.6  
Z70287-4|CAA94297.1|  299|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z99278-4|CAB16492.1|  871|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z99278-3|CAB16493.1|  867|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical ...    29   4.5  
Z95621-2|CAB09131.1|  330|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z79756-9|CAK12562.1|  830|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z79756-8|CAB02122.1|  891|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z79756-7|CAK12561.1|  855|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z78019-9|CAB01457.1|  330|Caenorhabditis elegans Hypothetical pr...    28   7.9  
U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    28   7.9  
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil...    28   7.9  
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical...    28   7.9  

>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 10/128 (7%)
 Frame = +1

Query: 226 DEWQNFHLRSSLLTNTRSVTAAHCWRTRRAQARQFTLALGTANIFSGGTRVTTSNVQMHG 405
           D  Q     ++++ +   VTAAHC    + Q R F       N  +     +     +H 
Sbjct: 59  DNGQGILCGATVIDDFWLVTAAHC--ALQLQTRSFVYVREPKN--NRERSFSVKEAYIHS 114

Query: 406 SYNMDTLHNDVAIINHNHVGFTNNIQRINLASGSTTLL-------VLGPGLPASE---GP 555
            YN  T  ND+A++  +       I+ + L    + LL       V+G GL   E   G 
Sbjct: 115 GYNNQTADNDIALLRISSDLSKLGIKPVCLVHDDSKLLKQYKNGVVIGYGLTLGEDSSGE 174

Query: 556 PMLLREPT 579
           P L+   T
Sbjct: 175 PKLINSQT 182


>Z35719-1|CAA84800.1|  296|Caenorhabditis elegans Hypothetical
           protein F17C8.2 protein.
          Length = 296

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -3

Query: 381 GDPGASGEDVSCAKSEGELTSLGSPGPP 298
           G+PGA G+D    K +GE    G PGPP
Sbjct: 201 GEPGAPGKDGE--KGKGEPGPAGPPGPP 226


>AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like
           protease protein 5 protein.
          Length = 331

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 597 VSLQVITNAVCARTFGNNVIIASTLCVDGSNGRSTCSGDSGG 722
           ++L   T A C   +G ++   S  C      ++ CSGDSGG
Sbjct: 236 LTLATETLATCEENWGTSIPFDS-FCTAEEEDKNVCSGDSGG 276


>Z70287-4|CAA94297.1|  299|Caenorhabditis elegans Hypothetical
           protein R09E10.6 protein.
          Length = 299

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +3

Query: 60  QKSPSNSTTTSRSVSPGPRVLDAPRKPLTSTVPGLWVVL 176
           ++ PS +  T  ++ P   V+D+P  P+TS+  GL  VL
Sbjct: 157 RQQPSKNVETMTAIEP-VEVMDSPTSPVTSSNSGLITVL 194


>Z99278-4|CAB16492.1|  871|Caenorhabditis elegans Hypothetical
           protein Y53C12B.3b protein.
          Length = 871

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -1

Query: 230 SSVRSQVQQDGGEHQRLRQNHPQSWYRRSQRLPRRV*DSRPGGY 99
           S   SQ + DG +HQ   +  PQ  Y +   +   + +  P GY
Sbjct: 351 SKRNSQNEDDGQQHQHQNEQQPQQGYHQQDFVSNPLWNQMPVGY 394


>Z99278-3|CAB16493.1|  867|Caenorhabditis elegans Hypothetical
           protein Y53C12B.3a protein.
          Length = 867

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -1

Query: 230 SSVRSQVQQDGGEHQRLRQNHPQSWYRRSQRLPRRV*DSRPGGY 99
           S   SQ + DG +HQ   +  PQ  Y +   +   + +  P GY
Sbjct: 351 SKRNSQNEDDGQQHQHQNEQQPQQGYHQQDFVSNPLWNQMPVGY 394


>AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical
           protein H11E01.3 protein.
          Length = 1464

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 39  RWRPWSWQKSPSNSTTTSRSVSPGPRVLDAPRKPLTSTVPG 161
           R RP + +++ + +TTT  SVS  P++ D    P   +V G
Sbjct: 259 RGRPSNKRQTTTTTTTTITSVSKSPQISDTNTLPTLPSVTG 299


>Z95621-2|CAB09131.1|  330|Caenorhabditis elegans Hypothetical
           protein ZK863.2 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -3

Query: 381 GDPGASGEDVSCAKSEGELTSLGSPGPP 298
           G+PGA G+    A S GE    G PGPP
Sbjct: 122 GNPGADGD----AGSPGEAGGAGPPGPP 145


>Z79756-9|CAK12562.1|  830|Caenorhabditis elegans Hypothetical
           protein F53C11.5c protein.
          Length = 830

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 75  NSTTTSRSVSPGPRVLDAPRKPLTSTVP 158
           +S TT  + +P P+ L +PR P TS  P
Sbjct: 447 SSATTLTAQAPPPQALTSPRTPSTSASP 474


>Z79756-8|CAB02122.1|  891|Caenorhabditis elegans Hypothetical
           protein F53C11.5b protein.
          Length = 891

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 75  NSTTTSRSVSPGPRVLDAPRKPLTSTVP 158
           +S TT  + +P P+ L +PR P TS  P
Sbjct: 508 SSATTLTAQAPPPQALTSPRTPSTSASP 535


>Z79756-7|CAK12561.1|  855|Caenorhabditis elegans Hypothetical
           protein F53C11.5a protein.
          Length = 855

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 75  NSTTTSRSVSPGPRVLDAPRKPLTSTVP 158
           +S TT  + +P P+ L +PR P TS  P
Sbjct: 472 SSATTLTAQAPPPQALTSPRTPSTSASP 499


>Z78019-9|CAB01457.1|  330|Caenorhabditis elegans Hypothetical
           protein ZK863.2 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -3

Query: 381 GDPGASGEDVSCAKSEGELTSLGSPGPP 298
           G+PGA G+    A S GE    G PGPP
Sbjct: 122 GNPGADGD----AGSPGEAGGAGPPGPP 145


>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
 Frame = +1

Query: 208 WTCD-RTDEWQNFHLRSSLLTNTRSVTAAHCW-RTRRAQARQFTLALGTANIFSGGTRV- 378
           WT   R    +  H  +S+L  T  +TAAHC+    R  + +  +     N   G  ++ 
Sbjct: 40  WTAALRNKATKAHHCGASILDKTHLITAAHCFEEDERVSSYEVVVGDWDNNQTDGNEQIF 99

Query: 379 TTSNVQMHGSYNMDTLHNDVAIINHNHVGFTNN 477
               +  +  Y  D   +D+AI+   + G   N
Sbjct: 100 YLQRIHFYPLYK-DIFSHDIAILEIPYPGIEFN 131


>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
            ATPase protein.
          Length = 2395

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = +3

Query: 549  RTSDAASGANNQQKRQVSLQVITNAVCARTFGNNVIIASTLCVDGSNGRSTCSGDSGG 722
            R + AA+G+N Q  +Q   Q  +   C +     V+ + +   DG  G ST  G  GG
Sbjct: 2071 RNAAAAAGSNVQFIQQQQQQQQSGKNCGQGQSFVVMGSQSSSNDGQGGASTVGGGGGG 2128


>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
            protein Y111B2A.22 protein.
          Length = 2395

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = +3

Query: 549  RTSDAASGANNQQKRQVSLQVITNAVCARTFGNNVIIASTLCVDGSNGRSTCSGDSGG 722
            R + AA+G+N Q  +Q   Q  +   C +     V+ + +   DG  G ST  G  GG
Sbjct: 2071 RNAAAAAGSNVQFIQQQQQQQQSGKNCGQGQSFVVMGSQSSSNDGQGGASTVGGGGGG 2128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,219,305
Number of Sequences: 27780
Number of extensions: 302671
Number of successful extensions: 1448
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1445
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)