Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0302
         (728 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g09620.1 68418.m01113 octicosapeptide/Phox/Bem1p (PB1) domain...    31   0.59 
At4g30180.1 68417.m04291 expressed protein                             29   2.4  
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro...    29   3.2  
At4g13800.1 68417.m02139 permease-related contains 9 predicted t...    29   3.2  
At5g57180.2 68418.m07143 expressed protein ; supporting cDNA gi|...    29   4.2  
At5g57180.1 68418.m07142 expressed protein ; supporting cDNA gi|...    29   4.2  
At5g22890.1 68418.m02677 zinc finger (C2H2 type) family protein ...    29   4.2  
At3g14860.2 68416.m01879 NHL repeat-containing protein contains ...    28   5.5  
At4g07470.1 68417.m01149 hypothetical protein                          28   7.3  
At5g10380.1 68418.m01204 zinc finger (C3HC4-type RING finger) fa...    27   9.6  
At1g73500.1 68414.m08509 mitogen-activated protein kinase kinase...    27   9.6  

>At5g09620.1 68418.m01113 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein predicted proteins,
           Arabidopsis thaliana and Drosophila melanogaster
           contains Pfam profile PF00564: PB1 domain
          Length = 531

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 4/119 (3%)
 Frame = +1

Query: 232 WQNFHLRSSLLTNTRSVTAAHCWRTRRAQARQFTL---ALGTANIFSGGTRVTTSNVQMH 402
           WQ     S++  N  + T+ +    ++ Q + + +   +     ++    R T    Q +
Sbjct: 346 WQGNTNNSNIQGNIYTTTSQNLPEQQQQQQQVYMIPAQSQAPGTLYQSVMRPTVQGNQGY 405

Query: 403 GSYNMDTLHN-DVAIINHNHVGFTNNIQRINLASGSTTLLVLGPGLPASEGPPMLLREP 576
               +  LH+ D  +   N  G+     +   + G   +  +GP +  S GPPM L+EP
Sbjct: 406 YPSPVQRLHHPDAYMEQQNQPGYNVVQPQPTFSGGPQVMTSVGPQVMTSVGPPMGLQEP 464


>At4g30180.1 68417.m04291 expressed protein 
          Length = 158

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +3

Query: 18  SSQQY*WRWRPWSWQKSPSNSTTTSRSVSPGPRVLDAPRK 137
           S+Q++ W         S SN TTT+ S S G R+L+ P K
Sbjct: 62  SAQEFAWSRFLLQKLSSSSNPTTTTSSSSDGIRILERPDK 101


>At5g58160.1 68418.m07280 formin homology 2 domain-containing
           protein / FH2 domain-containing protein low similarity
           to SP|Q05858 Formin (Limb deformity protein) {Gallus
           gallus}; contains Pfam profile PF02181: Formin Homology
           2(FH2) Domain
          Length = 1307

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = +1

Query: 538 PASEGPPMLLREPTTNKNAK*ASRSLP-TPSAPARLETM*SLPPP 669
           P    PP     PT   N   A +S P  P AP RL T  + PPP
Sbjct: 728 PPPPPPPPPPAPPTPQSNGISAMKSSPPAPPAPPRLPTHSASPPP 772


>At4g13800.1 68417.m02139 permease-related contains 9 predicted
           transmembrane domains; contains Pfam PF05653: Protein of
           unknown function (DUF803); identified as COG0697,
           Permeases of the drug/metabolite transporter (DMT)
           superfamily
          Length = 336

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 217 HKSSKMGVSTSVCGRTTHNPGTVEVSGFLGASKT 116
           HK+  MG STS+ G T+H+P    V    G+S++
Sbjct: 294 HKTKDMGNSTSLRGSTSHSPRDTPVFINSGSSRS 327


>At5g57180.2 68418.m07143 expressed protein ; supporting cDNA
           gi|13991645|gb|AF359387.1|AF359387
          Length = 435

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 69  PSNSTTTSRSVSPGPRVLDAPRKPL 143
           PS+STTT+R+ SP   + ++   PL
Sbjct: 27  PSSSTTTTRATSPSSTISESSNSPL 51


>At5g57180.1 68418.m07142 expressed protein ; supporting cDNA
           gi|13991645|gb|AF359387.1|AF359387
          Length = 424

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 69  PSNSTTTSRSVSPGPRVLDAPRKPL 143
           PS+STTT+R+ SP   + ++   PL
Sbjct: 27  PSSSTTTTRATSPSSTISESSNSPL 51


>At5g22890.1 68418.m02677 zinc finger (C2H2 type) family protein
           contains Pfam domain PF00096: Zinc finger, C2H2 type
          Length = 373

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = +1

Query: 361 SGGTRVTTSNVQMHGSYNMDTLHNDVAIINHNHVGFTNNIQRINLASGSTTLLVLGPG 534
           +G   +   +V +   YN+ TLH  V  I      +  +   IN +SGST+L V   G
Sbjct: 42  TGTKSMEDDDVSLSLLYNLSTLHEKVHQIQSLVSFYMVSTNNINQSSGSTSLAVANIG 99


>At3g14860.2 68416.m01879 NHL repeat-containing protein contains
           Pfam profile PF01436: NHL repeat
          Length = 493

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
 Frame = +3

Query: 57  WQKSPSNSTTTSRSVSPGPRVLDAP--RKPLTSTVPGLWVVLPQTLV-LTPILLDL*SH* 227
           + K+   S T+     PG   L  P   K +T   PG W    Q L  L  + L+  +  
Sbjct: 277 FSKTQVGSETSYEEEHPGKEKLSRPVHEKTITKEEPG-WPSFGQLLTDLCKLALEFIT-- 333

Query: 228 RMAELPSAEFLTDQH--PLRDRRSLLEDQESP 317
             + L  A F T+ +  PL+DR  + ED++ P
Sbjct: 334 --SHLVPARFQTNPNLRPLKDRLIMPEDEQEP 363


>At4g07470.1 68417.m01149 hypothetical protein 
          Length = 150

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 157 QDCGWFCRKRWCSPPSCWTCDRTDEWQN 240
           +DCG+   KRWC+ P C   D+  E +N
Sbjct: 85  RDCGF---KRWCAVPLCDEFDKIKEEKN 109


>At5g10380.1 68418.m01204 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 301

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +2

Query: 530 LGCRLRKDLRCCFGSQQPTKTPSEPP 607
           L C   KDLR CF    P   P  PP
Sbjct: 10  LSCLQFKDLRFCFRQYPPPPPPPPPP 35


>At1g73500.1 68414.m08509 mitogen-activated protein kinase kinase
           (MAPKK), putative (MKK9) mitogen-activated protein
           kinase kinase (MAPKK) family, PMID:12119167
          Length = 310

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 582 QQKRQVSLQVITNAVCARTFGNNVIIASTLCVDGSNGRSTC 704
           +++RQ++L++    +  R F  +   A+T  V G NG S C
Sbjct: 5   RERRQLNLRLPLPPISDRRFSTSSSSATTTTVAGCNGISAC 45


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,644,357
Number of Sequences: 28952
Number of extensions: 283603
Number of successful extensions: 1175
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1173
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)