Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0301
         (724 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      23   2.5  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   3.3  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   3.3  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   4.4  

>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +1

Query: 97  TAAHCWRTRRAQARQFTLALGTANIFSGGTRVTTSNVQMHGSYNMDTLH 243
           T A    T+R + +  TLA+   N + G   + T      G +  ++LH
Sbjct: 4   TGADRLMTQRCKEKLNTLAISVMNQWPGVRLLVTEGWDEEGYHTPESLH 52


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +2

Query: 443 RPHVWKQCDHCLHPLC*RL*RSSTCSGDSGG 535
           +P  W++CD        R+ +SS     SGG
Sbjct: 882 KPTCWRECDKATCEKLFRMKKSSALRPASGG 912


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = +2

Query: 140 SSPSLLAQLTSSPEAP--GSPPPMSR 211
           SSP L  +++ SP  P   SPPP  R
Sbjct: 83  SSPILAEKVSVSPTTPPTPSPPPEER 108


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +2

Query: 140  SSPSLLAQLTSSPEAPGSPPPMSR 211
            S PS    + ++ E PG PP   R
Sbjct: 980  SEPSETVTIITAEEVPGGPPTSIR 1003


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,079
Number of Sequences: 336
Number of extensions: 2974
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19259425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)