Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0301
         (724 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0372 + 2867471-2867775,2867805-2867901,2868539-2868916           29   3.7  
01_01_0306 + 2499350-2499678,2500041-2500137                           29   3.7  
08_02_1103 - 24329120-24329623                                         29   4.9  
08_02_0590 + 19044193-19044364,19044464-19045047,19045085-190460...    28   6.5  
12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649     28   8.6  
08_02_1480 + 27401923-27402158,27402847-27402982,27403119-274031...    28   8.6  
08_02_0588 + 19036509-19039235                                         28   8.6  

>12_01_0372 + 2867471-2867775,2867805-2867901,2868539-2868916
          Length = 259

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 210 LDIGGGDPGASGEDVSCAKSEGELTSLGSPG 118
           +++ G D   S    SC  S+G  ++ GSPG
Sbjct: 169 MEVDGNDDSDSSSPTSCVSSDGRSSAGGSPG 199


>01_01_0306 + 2499350-2499678,2500041-2500137
          Length = 141

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 617 WPLWQP*ADPNDVIPI 570
           WP+WQP  D N ++P+
Sbjct: 126 WPIWQPSQDLNSILPV 141


>08_02_1103 - 24329120-24329623
          Length = 167

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 18/61 (29%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
 Frame = +2

Query: 365 DLRCCFGSQQPTKTPSEPP-GHYQRRLRPHVWKQCDHCLHPLC*RL*RSSTCSGDSGGPL 541
           D R C    +P    +  P GH   R     W   DH   PLC      +T    S  P 
Sbjct: 99  DCRVCLARFEPESVVNRLPCGHLFHRACLEKWLDYDHATCPLCRHRLLPATTESPSPSPA 158

Query: 542 T 544
           T
Sbjct: 159 T 159


>08_02_0590 +
           19044193-19044364,19044464-19045047,19045085-19046059,
           19046219-19046605
          Length = 705

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
 Frame = +1

Query: 28  VIALTNGRTSICGASLLTNTRSVTAAHCWRTRRAQARQFTLALGTANIFS---GGTRVTT 198
           V+ + +GR S+   +L  +   + AA  WR+RR Q      AL    + +   GG+   T
Sbjct: 58  VVVIASGRRSVGEPTLDVSEMLLQAAETWRSRRTQREARPDALPPRPVAADGRGGSGEGT 117

Query: 199 SNVQMHGSYNM 231
           S  +  G   M
Sbjct: 118 SRARGRGEEGM 128


>12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649
          Length = 461

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 61  CGASLLTNTRSVTAAHC 111
           CG+ ++T TRSVT A C
Sbjct: 275 CGSRIITTTRSVTVASC 291


>08_02_1480 +
           27401923-27402158,27402847-27402982,27403119-27403168,
           27403810-27403813,27404394-27404494,27405084-27406305
          Length = 582

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 140 SSPSLLAQLTSSPEAPGSPPP 202
           SS S  +  +SSP AP SPPP
Sbjct: 7   SSTSSSSSASSSPRAPSSPPP 27


>08_02_0588 + 19036509-19039235
          Length = 908

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 28  VIALTNGRTSICGASLLTNTRSVTAAHCWRTRRAQ 132
           V+ + +GR S+   +L  +   + AA  WR+RR Q
Sbjct: 185 VVVIVSGRRSVGEPTLDVSEMLLQAAQAWRSRRTQ 219


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,522,195
Number of Sequences: 37544
Number of extensions: 380832
Number of successful extensions: 1551
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1550
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)