Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0301
         (724 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58160.1 68418.m07280 formin homology 2 domain-containing pro...    28   5.5  
At5g10380.1 68418.m01204 zinc finger (C3HC4-type RING finger) fa...    28   7.2  
At4g12490.1 68417.m01974 protease inhibitor/seed storage/lipid t...    27   9.5  
At2g31890.1 68415.m03896 expressed protein                             27   9.5  

>At5g58160.1 68418.m07280 formin homology 2 domain-containing
           protein / FH2 domain-containing protein low similarity
           to SP|Q05858 Formin (Limb deformity protein) {Gallus
           gallus}; contains Pfam profile PF02181: Formin Homology
           2(FH2) Domain
          Length = 1307

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +1

Query: 367 PPMLLREPTTNKNAK*ASRSLP-TPSAPARLETM*SLPPP 483
           PP     PT   N   A +S P  P AP RL T  + PPP
Sbjct: 733 PPPPPAPPTPQSNGISAMKSSPPAPPAPPRLPTHSASPPP 772


>At5g10380.1 68418.m01204 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 301

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +2

Query: 344 LGCXLRKDLRCCFGSQQPTKTPSEPP 421
           L C   KDLR CF    P   P  PP
Sbjct: 10  LSCLQFKDLRFCFRQYPPPPPPPPPP 35


>At4g12490.1 68417.m01974 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to pEARLI
           1 (Accession No. L43080): an Arabidopsis member of a
           conserved gene family (PGF95-099), Plant Physiol. 109
           (4), 1497 (1995); contains Pfam protease inhibitor/seed
           storage/LTP family domain PF00234
          Length = 182

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 385 EPTTNKNAK*ASRSLPTPSAPARLETM*SLPPPSVLT 495
           +P    N K  S  +PTPS P+      S+P PSV T
Sbjct: 35  KPRPLPNPKVPSPKVPTPSVPSPYVPTPSVPSPSVPT 71


>At2g31890.1 68415.m03896 expressed protein
          Length = 671

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +3

Query: 234 HPPQ-RRRIINHNHVGFTNNIQRINLASG 317
           +PP+ R RI+NHNH     ++   + ASG
Sbjct: 14  NPPETRHRIVNHNHRNLHISLSSSSFASG 42


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,420,634
Number of Sequences: 28952
Number of extensions: 260497
Number of successful extensions: 909
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)