Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0299
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    29   0.70 
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   0.92 
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    27   1.6  
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    27   1.6  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    26   4.9  
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.5  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    25   6.5  
SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2 |...    25   8.6  
SPBC1271.13 |mrpl8||mitochondrial ribosomal protein subunit L8|S...    25   8.6  

>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +2

Query: 29  NFDHDKHIFTGHGGKQRTKKEASEH--TNHFDPSGHSRKIVTKLMNAEHNKKTSNTKH 196
           N + D +    H  K    ++ S H   +HFDPS + +K+V+      + K +S  KH
Sbjct: 18  NEEDDDYYSNAHSEKS---EDHSNHIKVSHFDPSSYKQKLVSVRETQRNRKFSSLQKH 72


>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 28.3 bits (60), Expect = 0.92
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +2

Query: 53  FTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHN 172
           ++GH         ++   NHF+ +GH    +T  +N+ +N
Sbjct: 242 YSGHNSPHTNYSASTPSFNHFNAAGHPTGNITPTLNSPNN 281


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 445 YVQNIPTYCLAHLWRCPVLNRSLCEWA 365
           Y+QNIP       +RC  ++ ++C+W+
Sbjct: 466 YLQNIPIQKKYESYRCLFISGTICQWS 492


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +2

Query: 14  EYDYYNFDHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHS 133
           +YD++N DH  H    H     +  EA+         GHS
Sbjct: 21  DYDHHNHDHHGHDHHSHDSSSNSSSEAA-RLQFIQEHGHS 59


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = -3

Query: 477 PLFEIRHWNGVTSKIYRLTAWLICGVVP 394
           P F + HW     + Y    WL C  +P
Sbjct: 254 PFFALSHWYAFRIEDYDTPTWLSCARLP 281


>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 602

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +1

Query: 376 RGCDLERDNATNEPSSKSVYFGRNTVPVSDLE*WAREPGTAV 501
           RG   E+DN     SS+S  +    V VS+L    R PG  V
Sbjct: 3   RGKCKEKDNGLKRISSESEVWNFLDVTVSELNKQKRSPGQTV 44


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = -1

Query: 338 NA*DVPSISETSIHPNTPRVSAIASSFRWQLNSPSASHSCLLISN 204
           N    P+I + S+H N P  S    S    L   S S S   ISN
Sbjct: 140 NGSSYPNIRKNSVHVNAPMPSFPEGSTAVLLKHHSGSKSASAISN 184


>SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 461 LISNNGLVSPELLCYYPSKIII 526
           LI    L+ PELL YY SKI +
Sbjct: 101 LIEGYYLLLPELLPYYTSKIFV 122


>SPBC1271.13 |mrpl8||mitochondrial ribosomal protein subunit
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 207

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 219 TTMASRRTIELPTKGGRYCGYPRSVRVDARLRD 317
           TT+     + +P   GR CGY R +++  R  D
Sbjct: 77  TTLKKVFDVLVPRYNGRRCGYTRLLKLPPRSTD 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,466,610
Number of Sequences: 5004
Number of extensions: 50790
Number of successful extensions: 265
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 265
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)