Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0299
         (605 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_04_0124 + 16359695-16359734,16360217-16360453,16361133-163621...    30   1.6  
06_03_1105 - 27634787-27636025                                         29   2.9  
06_01_0076 - 622789-623689,623714-623931                               29   2.9  
10_06_0172 + 11473892-11474896                                         29   3.8  
07_03_0740 - 21102015-21102287,21102402-21102555,21102647-211028...    28   6.6  
05_07_0146 + 28018236-28018580,28018670-28018777,28018984-280191...    28   6.6  
12_02_0980 - 25018107-25018469,25018792-25018938,25019028-25020110     27   8.7  
02_04_0515 + 23582105-23583519,23583613-23583741,23583835-235839...    27   8.7  

>01_04_0124 + 16359695-16359734,16360217-16360453,16361133-16362104,
            16362211-16362398,16362564-16363942,16364024-16365047,
            16365171-16365566,16367484-16367999,16368085-16368226,
            16369409-16369553,16371351-16371432,16371851-16371895,
            16372018-16372140
          Length = 1762

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = -1

Query: 284  RVSAIASSFRWQLNSPSASHSC 219
            RV AIA   R Q NSPS+ HSC
Sbjct: 1129 RVLAIAHEERCQANSPSSCHSC 1150


>06_03_1105 - 27634787-27636025
          Length = 412

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -1

Query: 329 DVPSIS-ETSIHPNTPRVSAIASSFRWQLNSPSASHS 222
           D+P +S +++  PN PR+  + SS R   +S S+S +
Sbjct: 251 DIPRLSLDSAADPNPPRIRLVRSSHRHSTSSSSSSRA 287


>06_01_0076 - 622789-623689,623714-623931
          Length = 372

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -1

Query: 302 IHPNTPRVSAIASSFRWQLNSPSASHSCLLISNPSS 195
           + P+ P      SSFRWQL  PS     L  S P +
Sbjct: 58  LKPDIPNSHPHCSSFRWQLGDPSKRTLSLRCSAPQN 93


>10_06_0172 + 11473892-11474896
          Length = 334

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 264 GRYCGYPRSVRVDARLRDRWNILG 335
           G Y GYP +VRVDA     +N++G
Sbjct: 288 GAYPGYPGAVRVDAATGAGYNVVG 311


>07_03_0740 -
           21102015-21102287,21102402-21102555,21102647-21102884,
           21103008-21103218,21103303-21103442,21103537-21103665,
           21104120-21104960
          Length = 661

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 298 WMLVSEIDGTS*AFFCSHKISTSPTHRGCDLERDNATNEPS 420
           W    +I G + +  CS +I T P   G  + R  AT+ PS
Sbjct: 224 WSYKDDIGGRTLSVRCSFRIETKPFLNGTTMVRLPATSAPS 264


>05_07_0146 +
           28018236-28018580,28018670-28018777,28018984-28019148,
           28019269-28019736,28019823-28019936,28020038-28020715
          Length = 625

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +2

Query: 29  NFDHDKHIFTGHGGKQR--TKKEASEHTNH 112
           +FDH  H    HGG++R  +  EA  H +H
Sbjct: 275 HFDHHNHHHPIHGGRERGSSPAEADHHRHH 304


>12_02_0980 - 25018107-25018469,25018792-25018938,25019028-25020110
          Length = 530

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 107 WCVQTLLSWCAAYHRG 60
           W ++ L  WCAA HRG
Sbjct: 192 WSLEQLNRWCAALHRG 207


>02_04_0515 +
           23582105-23583519,23583613-23583741,23583835-23583970,
           23584051-23584139,23584236-23584347,23584427-23584533,
           23584630-23584723
          Length = 693

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +2

Query: 254 NERRTLLRIPEECSGGCSSQRSMEHPRR 337
           +E RT  R P E SGG  S+RS E P +
Sbjct: 77  SEGRTEDREPGEVSGGSGSERSGERPMK 104


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,826,616
Number of Sequences: 37544
Number of extensions: 322958
Number of successful extensions: 868
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)