Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0299
         (605 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56655| Best HMM Match : No HMM Matches (HMM E-Value=.)              66   3e-11
SB_24582| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.008
SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)                      33   0.24 
SB_57023| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.72 
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)              31   0.72 
SB_25338| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_55936| Best HMM Match : Paramecium_SA (HMM E-Value=0.56)            28   5.1  

>SB_56655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 66

 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 29/63 (46%), Positives = 41/63 (65%)
 Frame = +2

Query: 5   FFDEYDYYNFDHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHNKKTS 184
           +FDEYDYYNFD  +++  G+  K R+K+EA  +TN F P GH RK++ K  N E N+   
Sbjct: 4   YFDEYDYYNFD--RNVVEGNTRKGRSKREACLNTNRFCPGGHERKVLEKYRNTEKNRAAK 61

Query: 185 NTK 193
            +K
Sbjct: 62  PSK 64


>SB_24582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 69

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +2

Query: 11  DEYDYYNFDHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHS-RKIVTKLMNAEHNKKTSN 187
           D+YD Y+FD   H   G   K ++KKEAS++ N     GHS RK    + + E  +K   
Sbjct: 5   DKYDDYDFDERLH--EGGARKGKSKKEASQNKN-VSTQGHSERKAAEYIQHGEDKRKEEK 61

Query: 188 TK 193
            K
Sbjct: 62  IK 63


>SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)
          Length = 1291

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -3

Query: 189  VFEVFLLCSAFMSFVTIFLEC-PDGSKWLVCSDASFLVRCLP 67
            VF V +L     S + + L C P  S  L CS +SFL+ C P
Sbjct: 1181 VFSVIILFITVFSIIILLLPCSPSSSFSLPCSPSSFLLPCSP 1222


>SB_57023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 388

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
 Frame = +2

Query: 26  YNFDHDKHIFT-GHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHNKKTSNTKH 196
           Y  DHD +    GH     T +   EH  +    GH     T     EH+  TS  +H
Sbjct: 327 YGHDHDTNTLRYGHDHDTNTLRYEQEHDTNTSRYGHDHDTNTLRYGHEHDTNTSRYEH 384


>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
          Length = 1903

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
 Frame = +2

Query: 26  YNFDHDKHIFT-GHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHNKKTSNTKH 196
           Y  DHD +    GH     T +   EH  +    GH     T     EH+  TS  +H
Sbjct: 383 YGHDHDTNTLRYGHDHDTNTLRYEQEHDTNTSRYGHDHDTNTLRYGHEHDTNTSRYEH 440


>SB_25338| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1360

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +2

Query: 71  KQRTKKEA--SEHTNHFDPSGHSRKIVTKLMNAEHNKKTSN 187
           K R  K+A  S++  H++   H R +V+KL+   HN   +N
Sbjct: 490 KDRMHKKAIKSKNQQHWEAFKHQRNLVSKLIKDSHNDYLNN 530


>SB_55936| Best HMM Match : Paramecium_SA (HMM E-Value=0.56)
          Length = 581

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -1

Query: 320 SISETSIHPNTPRVSAIASSFRWQLNSPSASHSCLLISNPSSVW 189
           +++ T +  +   V+   S  + Q  S SASH C  +SNP S W
Sbjct: 505 TLNPTCVTLDPSCVTLDLSCVKAQCVSASASHRCGRVSNPGSNW 548


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,580,824
Number of Sequences: 59808
Number of extensions: 396817
Number of successful extensions: 1090
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1088
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)