Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0298
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.17c |||succinate-CoA ligase alpha subunit|Schizosacchar...    80   3e-16
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc...    28   1.2  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    28   1.2  
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po...    26   5.0  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    26   6.6  
SPBC19G7.16 |iws1||transcription elongation factor complex subun...    25   8.7  

>SPAC16E8.17c |||succinate-CoA ligase alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 80.2 bits (189), Expect = 3e-16
 Identities = 44/86 (51%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
 Frame = +2

Query: 2   FLKDPETKGIILIGEIGGNAEELASEYLTQYNTGQKA-KPVVSFIAGLTAPPGRRMXXXX 178
           FL DP T+GIILIGEIGG+AEE A+E++   N  +   KPVVSFIAG TAP GRRM    
Sbjct: 228 FLDDPNTQGIILIGEIGGSAEEDAAEFIRAANASRSTPKPVVSFIAGATAPKGRRMGHAG 287

Query: 179 XXXXXXXXXXMDKIKALEKANVIVTR 256
                       K +ALE A V ++R
Sbjct: 288 AIVAGGKGTAAAKFEALEAAGVRISR 313


>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 615

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +2

Query: 2   FLKDPETKGIILIGEIGGNAEELASEYLTQYNTGQKAKPVVSFIAG 139
           F  DP  K ++L+GE+GG  E    E +     G   KP+V++  G
Sbjct: 224 FEADPACKLMVLLGEVGGVEEYRVIEAV---KNGTIKKPIVAWAIG 266


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 1/89 (1%)
 Frame = -3

Query: 738  SQISFQPYRQITNTIHITVHLSEYYI*K*VNSTYNNNYLIEFLTNESAYLIRCTIEFV-H 562
            S + F+PY     T  +   L  +   +   S  N   +        AYL    +EF  H
Sbjct: 1068 SDVDFKPYNVFIYTAFVVPRLDRFAD-ENTQSVSNLMKIFRCWFENEAYL-DSVLEFSSH 1125

Query: 561  AIAISTRPIKHCYIKLNLLIYVCTRLNII 475
             +        H  +KL +L+Y+   LN++
Sbjct: 1126 ILTALLNTASHTAVKLPVLLYILDTLNLV 1154


>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = -3

Query: 570 FVHAIAISTRPIKHCYIKLNLLIYVCTRLNIIFL*KYQYVSGIA 439
           F+ A + ST   KH Y KLNLL+Y      I+ +  + Y  G A
Sbjct: 173 FMEAKSHSTHTKKH-YNKLNLLLYSSGVAFIVMIPVWLYQEGFA 215


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +1

Query: 385 YCYYLFSIVVTICLVLLF 438
           + +YLF+IV+T C+  +F
Sbjct: 543 FIFYLFTIVITFCMSAVF 560


>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 78  SDANSSAFPPISPMRMMPLVSGSLRK 1
           ++ NS   P    ++M+PLV   LRK
Sbjct: 204 AELNSEQLPATEKLKMLPLVDAVLRK 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,921,617
Number of Sequences: 5004
Number of extensions: 57605
Number of successful extensions: 135
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)