Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0298
         (746 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1015 + 23307700-23307906,23309274-23309483,23309915-233100...    83   2e-16
02_05_0953 - 33027007-33029079                                         33   0.18 
01_02_0089 - 10997882-10997957,10998139-10998423,10998519-109985...    33   0.18 
12_01_0272 + 1985348-1986036,1986142-1988020                           29   3.0  
11_01_0271 + 2039100-2041760                                           29   3.0  
11_01_0531 - 4192567-4193253,4193900-4194427                           29   5.2  
09_04_0744 - 19867604-19867686,19868075-19869872,19870777-198708...    28   9.1  

>07_03_1015 +
           23307700-23307906,23309274-23309483,23309915-23310085,
           23310163-23310286,23310753-23310814,23311185-23311266,
           23311870-23312009
          Length = 331

 Score = 83.4 bits (197), Expect = 2e-16
 Identities = 44/83 (53%), Positives = 54/83 (65%)
 Frame = +2

Query: 2   FLKDPETKGIILIGEIGGNAEELASEYLTQYNTGQKAKPVVSFIAGLTAPPGRRMXXXXX 181
           F+ DP+T+GI+LIGEIGG AEE A+ ++ +  T    KPVV+FIAGLTAPPGRRM     
Sbjct: 230 FVDDPQTEGIVLIGEIGGTAEEDAAAFIQESKT---QKPVVAFIAGLTAPPGRRMGHAGA 286

Query: 182 XXXXXXXXXMDKIKALEKANVIV 250
                     DKIKAL +A V V
Sbjct: 287 IVSGGKGTAQDKIKALREAGVTV 309


>02_05_0953 - 33027007-33029079
          Length = 690

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 20/49 (40%), Positives = 24/49 (48%)
 Frame = -2

Query: 256 TSDDYISFF*SLNFVHGASFAARNDGTSVTHSSTRGSRQTGDKRHHRLS 110
           T+DDYI+F  SL +         NDG S T  STR  R  GD  +   S
Sbjct: 549 TADDYITFLCSLGYNSSQIALFTNDG-STTDCSTRPRRSVGDLNYPAFS 596


>01_02_0089 -
           10997882-10997957,10998139-10998423,10998519-10998589,
           10998685-10998761,10998858-10998963,10999062-10999189,
           10999291-10999423,11000005-11000133,11000220-11000375,
           11000770-11000846,11000938-11000998,11001249-11001383,
           11001642-11001765,11001852-11001917,11002010-11002112,
           11002603-11002652,11003795-11003895
          Length = 625

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 17/45 (37%), Positives = 28/45 (62%)
 Frame = +2

Query: 14  PETKGIILIGEIGGNAEELASEYLTQYNTGQKAKPVVSFIAGLTA 148
           P+ K ++++GE+GG  E    E L Q   G+  KPVV++++G  A
Sbjct: 238 PQVKMMVVLGELGGKDEYSLVEALKQ---GKVQKPVVAWVSGTCA 279


>12_01_0272 + 1985348-1986036,1986142-1988020
          Length = 855

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/48 (27%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = -3

Query: 642 TYNNNYLIEFLTNESAYLIRCTI-EFVHAIAISTRPIKHCYIKLNLLI 502
           TY+  Y++ F +N +A++    I   + +  IST+ IK+C +++ +++
Sbjct: 379 TYHRRYMVFFYSNATAFIASLVILILLLSNMISTQGIKYCALQVAMIL 426


>11_01_0271 + 2039100-2041760
          Length = 886

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/48 (27%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = -3

Query: 642 TYNNNYLIEFLTNESAYLIRCTI-EFVHAIAISTRPIKHCYIKLNLLI 502
           TY+  Y++ F +N +A++    I   + +  IST+ IK+C +++ +++
Sbjct: 414 TYHRRYMVFFYSNATAFIASLVILILLLSNMISTQGIKYCALQVAMIL 461


>11_01_0531 - 4192567-4193253,4193900-4194427
          Length = 404

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -3

Query: 591 LIRCTIEFVHAIAISTRPIKHCYIKLNLLIYVCTRLNIIFL*KY 460
           LI      +HA+ I+T   +   I + L+IYVC    I+++ K+
Sbjct: 293 LILAFFSAIHAVVIATSSSRTVLITMFLVIYVCFNALILWIEKW 336


>09_04_0744 -
           19867604-19867686,19868075-19869872,19870777-19870801,
           19872313-19872710
          Length = 767

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -2

Query: 604 RIRLSHKVHYRIRACYSNFNKTNKALLYKTQSVDICMYEIKYYIFMK 464
           RI   H+V  RIR   ++  + N+  L K  SV   +Y+   YI  K
Sbjct: 106 RIAERHRVAARIRELKASVEELNQRFLRKNNSVKTDVYKSTEYILEK 152


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,297,998
Number of Sequences: 37544
Number of extensions: 313686
Number of successful extensions: 568
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)