Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0298
         (746 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4600| Best HMM Match : No HMM Matches (HMM E-Value=.)               93   2e-19
SB_54338| Best HMM Match : Ligase_CoA (HMM E-Value=0)                  67   2e-11
SB_59588| Best HMM Match : Hormone_4 (HMM E-Value=1.6)                 29   4.0  
SB_8875| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.0  
SB_6169| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.0  
SB_39703| Best HMM Match : PHD (HMM E-Value=9.3e-12)                   28   7.0  
SB_25624| Best HMM Match : PHD (HMM E-Value=1.3e-17)                   28   7.0  
SB_46020| Best HMM Match : PHD (HMM E-Value=9.3e-12)                   28   7.0  
SB_58104| Best HMM Match : TPR_1 (HMM E-Value=0)                       28   9.2  
SB_19714| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  

>SB_4600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1140

 Score = 93.5 bits (222), Expect = 2e-19
 Identities = 43/55 (78%), Positives = 47/55 (85%)
 Frame = +2

Query: 2   FLKDPETKGIILIGEIGGNAEELASEYLTQYNTGQKAKPVVSFIAGLTAPPGRRM 166
           FL DP TKGI+LIGEIGG AEE A+EYL + NTG  AKPVVSFIAG+TAPPGRRM
Sbjct: 62  FLNDPGTKGIVLIGEIGGGAEEKAAEYLAENNTGDNAKPVVSFIAGVTAPPGRRM 116


>SB_54338| Best HMM Match : Ligase_CoA (HMM E-Value=0)
          Length = 445

 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 38/85 (44%), Positives = 48/85 (56%)
 Frame = +2

Query: 2   FLKDPETKGIILIGEIGGNAEELASEYLTQYNTGQKAKPVVSFIAGLTAPPGRRMXXXXX 181
           F  DP+T+ I++IGEIGG AEE A+ Y+    T    KPVVS+IAG+TAP G+RM     
Sbjct: 91  FQNDPQTEAIVMIGEIGGTAEEEAAAYIKANVT----KPVVSYIAGVTAPKGKRMGHAGA 146

Query: 182 XXXXXXXXXMDKIKALEKANVIVTR 256
                     +K  ALE A V   R
Sbjct: 147 IISGGKGTADEKFAALEDAGVKTVR 171


>SB_59588| Best HMM Match : Hormone_4 (HMM E-Value=1.6)
          Length = 192

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 568 RACYSNFNKTNKALLYKTQSVDICMYEIKYY 476
           R  Y   ++    ++ K Q    CMY+IKYY
Sbjct: 162 RQVYGRLSRNFDTIVQKVQQTYSCMYDIKYY 192


>SB_8875| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 189

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 568 RACYSNFNKTNKALLYKTQSVDICMYEIKYY 476
           R  Y   ++    ++ K Q    CMY+IKYY
Sbjct: 159 RQVYGRLSRNFDTIVQKVQQTYSCMYDIKYY 189


>SB_6169| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 335

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -3

Query: 348 NAFTHF*GTLSLDDL*SFHFFVKFHAHFGRRRVTI 244
           N++  F  T+ L +  S  FFV+   HFG RRV I
Sbjct: 242 NSYPTFVRTMGLFEAYSGRFFVRIFKHFGWRRVGI 276


>SB_39703| Best HMM Match : PHD (HMM E-Value=9.3e-12)
          Length = 886

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -2

Query: 526 LYKTQSVDICMYEIKYYIFMKISICLRNRKITIQDKL*QQSKINNSN 386
           L K     +   ++     +K +IC+ N K T+ D+L +   +N SN
Sbjct: 475 LKKRAKAKVAPSQVNQAAMLKTTICICNEKATMTDRLIECHNVNCSN 521


>SB_25624| Best HMM Match : PHD (HMM E-Value=1.3e-17)
          Length = 1828

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -2

Query: 526  LYKTQSVDICMYEIKYYIFMKISICLRNRKITIQDKL*QQSKINNSN 386
            L K     +   ++     +K +IC+ N K T+ D+L +   +N SN
Sbjct: 906  LKKRAKAKVAPSQVNQAAMLKTTICICNEKATMTDRLIECHNVNCSN 952


>SB_46020| Best HMM Match : PHD (HMM E-Value=9.3e-12)
          Length = 824

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -2

Query: 526 LYKTQSVDICMYEIKYYIFMKISICLRNRKITIQDKL*QQSKINNSN 386
           L K     +   ++     +K +IC+ N K T+ D+L +   +N SN
Sbjct: 516 LKKRAKAKVAPSQVNQAAMLKTTICICNEKATMTDRLIECHNVNCSN 562


>SB_58104| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 398

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 601 IRLSHKVHYRIRACYSNFNKTNKALLYKTQSVDICM 494
           I +  K ++ + + Y+  +  NKAL Y  QS++ CM
Sbjct: 68  IEMQAKCYHDMGSTYNKLHNYNKALDYYKQSLNACM 103


>SB_19714| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 66

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 383 YIAIIYFRLLLQFVLYCYFAIPET 454
           Y  I++  L+L F L+ YF +PET
Sbjct: 6   YTFIVFLVLVLGFWLFTYFLVPET 29


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,970,566
Number of Sequences: 59808
Number of extensions: 399415
Number of successful extensions: 1097
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)