Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0298
(746 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70203-4|CAA94107.1| 322|Caenorhabditis elegans Hypothetical pr... 103 1e-22
AF003389-2|AAC71132.1| 321|Caenorhabditis elegans Hypothetical ... 101 5e-22
AC024882-12|AAF60928.2| 347|Caenorhabditis elegans Seven tm rec... 30 1.5
Z93397-6|CAB07718.2| 550|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z47067-2|CAA87329.1| 498|Caenorhabditis elegans Hypothetical pr... 28 6.1
U80847-2|AAB37982.2| 475|Caenorhabditis elegans Hypothetical pr... 28 6.1
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t... 28 6.1
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t... 28 6.1
AL110485-22|CAB60371.1| 399|Caenorhabditis elegans Hypothetical... 28 6.1
AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel... 28 6.1
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel... 28 6.1
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel... 28 6.1
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel... 28 6.1
Z29115-4|CAA82364.1| 125|Caenorhabditis elegans Hypothetical pr... 28 8.1
>Z70203-4|CAA94107.1| 322|Caenorhabditis elegans Hypothetical
protein C05G5.4 protein.
Length = 322
Score = 103 bits (247), Expect = 1e-22
Identities = 51/84 (60%), Positives = 60/84 (71%)
Frame = +2
Query: 2 FLKDPETKGIILIGEIGGNAEELASEYLTQYNTGQKAKPVVSFIAGLTAPPGRRMXXXXX 181
FL+DPETKGIILIGEIGG+AEE A+ YL ++N+G KPVVSFIAG+TAPPGRRM
Sbjct: 221 FLEDPETKGIILIGEIGGSAEEEAAAYLKEHNSGANRKPVVSFIAGVTAPPGRRMGHAGA 280
Query: 182 XXXXXXXXXMDKIKALEKANVIVT 253
DKI AL +A V+VT
Sbjct: 281 IISGGKGTAADKINALREAGVVVT 304
>AF003389-2|AAC71132.1| 321|Caenorhabditis elegans Hypothetical
protein F23H11.3 protein.
Length = 321
Score = 101 bits (242), Expect = 5e-22
Identities = 51/84 (60%), Positives = 59/84 (70%)
Frame = +2
Query: 2 FLKDPETKGIILIGEIGGNAEELASEYLTQYNTGQKAKPVVSFIAGLTAPPGRRMXXXXX 181
FL+D +TKGIILIGEIGG AEE A+E+L N+G AKPVVSFIAG+TAPPGRRM
Sbjct: 222 FLEDEQTKGIILIGEIGGQAEEQAAEFLKSRNSGSNAKPVVSFIAGVTAPPGRRMGHAGA 281
Query: 182 XXXXXXXXXMDKIKALEKANVIVT 253
DKI+AL ANV+VT
Sbjct: 282 IIAGGKGTAGDKIEALRNANVVVT 305
>AC024882-12|AAF60928.2| 347|Caenorhabditis elegans Seven tm
receptor protein 163 protein.
Length = 347
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 470 KNIIFNLVHTYINRLSFI*QCFIGLVEIAIACTNS 574
K F+ + + R+SF CF ++ I + CTNS
Sbjct: 3 KETTFDAMKATVQRISFAFSCFSNIILILLICTNS 37
>Z93397-6|CAB07718.2| 550|Caenorhabditis elegans Hypothetical
protein ZC482.4 protein.
Length = 550
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -2
Query: 499 CMYEIKYYIFMKI-SICLRNRKITIQDKL*QQSKINNSNIVTKTLYKSGST*RVY 338
C+ +KY M I S C+ +R +Q L + N + I +KT+ K RVY
Sbjct: 4 CISLLKYLFCMSILSNCMADRANDVQKALNETCVFNETEINSKTIKKFPKCDRVY 58
>Z47067-2|CAA87329.1| 498|Caenorhabditis elegans Hypothetical
protein C43C3.2 protein.
Length = 498
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 332 KCVNALGRTTLV*CFSYYIAIIYFRLLLQFVLYCYF 439
KCV+ LGR V F+ Y ++ + + L F++Y Y+
Sbjct: 249 KCVDDLGRELFV-VFTLYSFVLAYLMPLLFMIYFYY 283
>U80847-2|AAB37982.2| 475|Caenorhabditis elegans Hypothetical
protein C17H11.1 protein.
Length = 475
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = -3
Query: 744 ISSQISFQPYRQITNTIHITVHLSEYYI*K*VNSTYNNNYLI 619
+ + +FQ YR +NT+ + H +Y+ +S Y +L+
Sbjct: 327 METNFNFQLYRHCSNTLEVLNHCLNFYVFCIASSEYTRAFLL 368
>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1797
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 374 FSYYIAIIYFRLLLQFVLYCYFAIPETY*YFHKN 475
FS +I+II+ LL F+L+CY I + + H N
Sbjct: 122 FSVFISIIH---LLSFLLHCYQLIDNFFPFLHLN 152
>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1831
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 374 FSYYIAIIYFRLLLQFVLYCYFAIPETY*YFHKN 475
FS +I+II+ LL F+L+CY I + + H N
Sbjct: 122 FSVFISIIH---LLSFLLHCYQLIDNFFPFLHLN 152
>AL110485-22|CAB60371.1| 399|Caenorhabditis elegans Hypothetical
protein Y46G5A.28 protein.
Length = 399
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = -3
Query: 630 NYLIEFLTNESAYLIRCTIEFVHAIAISTRPIKHCYIK 517
+YL FL N Y++ CT++F+ + I+ K +++
Sbjct: 331 SYLKGFLENGDDYMVSCTLKFLLGMPITLSQFKTSHVE 368
>AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
b protein.
Length = 978
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 374 FSYYIAIIYFRLLLQFVLYCYFAIPETY*YFHKN 475
FS +I+II+ LL F+L+CY I + + H N
Sbjct: 180 FSVFISIIH---LLSFLLHCYQLIDNFFPFLHLN 210
>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
a protein.
Length = 1562
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 374 FSYYIAIIYFRLLLQFVLYCYFAIPETY*YFHKN 475
FS +I+II+ LL F+L+CY I + + H N
Sbjct: 180 FSVFISIIH---LLSFLLHCYQLIDNFFPFLHLN 210
>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
c protein.
Length = 1913
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 374 FSYYIAIIYFRLLLQFVLYCYFAIPETY*YFHKN 475
FS +I+II+ LL F+L+CY I + + H N
Sbjct: 180 FSVFISIIH---LLSFLLHCYQLIDNFFPFLHLN 210
>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
d protein.
Length = 1861
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 374 FSYYIAIIYFRLLLQFVLYCYFAIPETY*YFHKN 475
FS +I+II+ LL F+L+CY I + + H N
Sbjct: 152 FSVFISIIH---LLSFLLHCYQLIDNFFPFLHLN 182
>Z29115-4|CAA82364.1| 125|Caenorhabditis elegans Hypothetical
protein T26G10.5 protein.
Length = 125
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Frame = +2
Query: 377 SYYIAIIYFR--LLLQFVLYCYFAIPE-TY*YFHKN 475
SYYI I+ FR LL+ F++ C+ + E ++ + H++
Sbjct: 36 SYYIKIMMFRLFLLISFIVLCHSIVSEISHRFLHRD 71
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,920,515
Number of Sequences: 27780
Number of extensions: 316427
Number of successful extensions: 651
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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