Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0298
         (746 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          26   0.43 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      26   0.43 
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    25   1.00 
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    25   1.00 
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    23   2.3  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    23   2.3  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   2.3  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    23   2.3  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   7.0  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +2

Query: 260 RPKWAWNFT 286
           RP WAWNFT
Sbjct: 656 RPMWAWNFT 664


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +2

Query: 260 RPKWAWNFT 286
           RP WAWNFT
Sbjct: 656 RPMWAWNFT 664


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 1.00
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 613 KFYKIIIVISRVYLLSNVIFA*MYCNVYR 699
           K +KII  +S  Y  +N  +  +YCN YR
Sbjct: 77  KEHKIISSLSNNYNYNNNNYKKLYCNNYR 105


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 24.6 bits (51), Expect = 1.00
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 559 YSNFNKTNKALLYKTQSVDI 500
           Y+N+N  NK L YK   ++I
Sbjct: 94  YNNYNNYNKKLYYKNYIINI 113


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 613 KFYKIIIVISRVYLLSNVIFA*MYCNVYR 699
           K +KII  +S  Y  +N  +  +YCN Y+
Sbjct: 77  KEHKIISSLSNNYNYNNNNYKKLYCNNYK 105


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 613 KFYKIIIVISRVYLLSNVIFA*MYCNVYR 699
           K +KII  +S  Y  +N  +  +YCN Y+
Sbjct: 77  KEHKIISSLSNNYNYNNNNYKKLYCNNYK 105


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 595 LSHKVHYRIRACYSNFNKTNKALLYKTQSVDI 500
           LS+  +Y       N+N  NK L YK   ++I
Sbjct: 318 LSNNYNYNNNNYKYNYNNYNKKLYYKNYIINI 349


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 15/64 (23%), Positives = 30/64 (46%)
 Frame = -2

Query: 619 RIFNKRIRLSHKVHYRIRACYSNFNKTNKALLYKTQSVDICMYEIKYYIFMKISICLRNR 440
           RI   R R  +K +  +R    NF+  ++    KT+ +D+ +Y       ++    ++N 
Sbjct: 42  RIHTVRTRGGNKKYRALRLDTGNFSWGSECTTRKTRIIDV-VYNASNNELVRTKTLVKNA 100

Query: 439 KITI 428
            +TI
Sbjct: 101 IVTI 104


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 556 SNFNKTNKALLYKTQSVDI 500
           +N+N  NK L YK   ++I
Sbjct: 336 NNYNNYNKKLYYKNYIINI 354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,607
Number of Sequences: 438
Number of extensions: 4290
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)