Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0297
         (634 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    24   1.4  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   5.7  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   5.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   5.7  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    21   7.5  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   7.5  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   9.9  

>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 14/44 (31%), Positives = 18/44 (40%)
 Frame = -2

Query: 540 KIIIFKGNQCKIIINTHEMNQHKIYINLENIYHVEYKNISINYN 409
           KII    N  K     +  N +  Y N  N Y+  YK +  N N
Sbjct: 313 KIISSLSNNYKYSNYNNYNNNYNNYNNYNNNYNNNYKKLYYNIN 356


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 187 NINYERLHSRSLYINRGMINFIPL 258
           N NY   +++ LY N   I  IP+
Sbjct: 315 NNNYNNYNNKKLYYNINYIEQIPV 338


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = -1

Query: 46  ILYQPDKNI 20
           IL+QPDKNI
Sbjct: 763 ILFQPDKNI 771


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = -1

Query: 46  ILYQPDKNI 20
           IL+QPDKNI
Sbjct: 853 ILFQPDKNI 861


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +1

Query: 145 ISHGLCSSGIFCLANINYERLHSRSLYINRGMINFIPL 258
           I   L ++ I  ++N N +  +++ LY N   I  IP+
Sbjct: 81  IISSLSNNYISNISNYNNDNNYNKKLYYNINYIEQIPV 118


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 285 SSNIAAPPSLNLLGEISL 338
           S  ++ PP+LNL+ +I L
Sbjct: 28  SPTLSTPPTLNLMEQILL 45


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 598 CFVFVVIFYLKSNRNKIN 545
           C +FVVIF+    R + N
Sbjct: 288 CSLFVVIFHFAHPREEFN 305


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,462
Number of Sequences: 438
Number of extensions: 1972
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)