Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0296
         (594 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    27   1.6  
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    25   8.3  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    25   8.3  

>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +2

Query: 125  FIDYDIYILIVFLVFSVCEGSLGLSILVSIIRSHGNDYFQRFRN 256
            +IDY I  L+  L F+   GS  LS ++ +  +   +Y+++F N
Sbjct: 1711 YIDYPISELLQMLGFTASIGSSELSQVILMTVTTKKEYYKKFLN 1754


>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 236 YFQRFRNYNDKIFIYNNFYNSF 301
           Y    RNY+DK+F Y    N +
Sbjct: 2   YIPNLRNYHDKVFPYGPSSNGY 23


>SPAC6G9.04 |mug79||meiotically upregulated gene
            Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 254  NYNDKIFIYNNFYNSFMFYKKYILIGSNNIIFY 352
            +Y   +   NN + +  + KKY ++ S  +IFY
Sbjct: 1051 SYKKMVLSKNNRWVAGYWKKKYCIVDSGKLIFY 1083


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 984,699
Number of Sequences: 5004
Number of extensions: 11196
Number of successful extensions: 31
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)