Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0296
         (594 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56597| Best HMM Match : COesterase (HMM E-Value=0)                  30   1.2  
SB_6604| Best HMM Match : Extensin_2 (HMM E-Value=0.27)                27   8.6  

>SB_56597| Best HMM Match : COesterase (HMM E-Value=0)
          Length = 505

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +2

Query: 140 IYILIVFLVFSVCEGSLGLSILVSIIRSHGNDYFQRF 250
           I I+I+ ++  + E  + LSI+++II    +DY Q +
Sbjct: 462 IIIIIIIIIIIIIENVINLSIIINIIDVDVDDYLQAY 498


>SB_6604| Best HMM Match : Extensin_2 (HMM E-Value=0.27)
          Length = 492

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/47 (38%), Positives = 21/47 (44%)
 Frame = +2

Query: 215 IRSHGNDYFQRFRNYNDKIFIYNNFYNSFMFYKKYILIGSNNIIFYN 355
           IR+H  D FQ    Y     +YNN YN+   Y      G NN   YN
Sbjct: 372 IRTHAKDNFQPPYQYGLNNNVYNNGYNNNNGYNSN---GYNNGYNYN 415


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,272,086
Number of Sequences: 59808
Number of extensions: 63623
Number of successful extensions: 163
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)