Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0295
         (775 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g23800.1 68416.m02991 selenium-binding family protein contain...    29   4.5  

>At3g23800.1 68416.m02991 selenium-binding family protein contains
           Pfam profile: PF05694 56kDa selenium binding protein
           (SBP56)
          Length = 480

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 21/73 (28%), Positives = 27/73 (36%), Gaps = 2/73 (2%)
 Frame = -1

Query: 469 DDPAFPVLPGQVGKQGLSQKYTFVLFSRAHGLCCKIDXXXXXXXXXXXXXXXXXXCRTNK 290
           +DP  PVL GQ+   GL QK + VL     G   + D                      K
Sbjct: 346 EDPKTPVLTGQIHVGGLVQKGSLVLALGEEGKAFQFDVPKIKGQRLRGGPQMFQLSLDGK 405

Query: 289 --YINNNTRSRWD 257
             Y+ N+  S WD
Sbjct: 406 RLYVTNSLFSVWD 418


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,689,629
Number of Sequences: 28952
Number of extensions: 271804
Number of successful extensions: 477
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)