Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0294
         (779 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48459| Best HMM Match : B12-binding_2 (HMM E-Value=3.3)             73   3e-13
SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09)         30   2.4  
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  

>SB_48459| Best HMM Match : B12-binding_2 (HMM E-Value=3.3)
          Length = 115

 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 31/35 (88%), Positives = 32/35 (91%)
 Frame = +2

Query: 509 ACHKGWGVSVIIGVAAAGEEISTRPFQLVTGRTWK 613
           ACHKGWG SVIIGVAA G+EISTRPFQLVTGR WK
Sbjct: 29  ACHKGWGESVIIGVAAGGQEISTRPFQLVTGRVWK 63



 Score = 58.0 bits (134), Expect = 8e-09
 Identities = 25/41 (60%), Positives = 34/41 (82%)
 Frame = +1

Query: 610 EGTAFGGYKSRESVPKLVDEYLEKKLPLDEFVTHNVPLKEI 732
           +GTAFGGYKS + VP+LV++YL  K+ +DEFVTHN+ L +I
Sbjct: 63  KGTAFGGYKSGDGVPQLVEDYLAGKVMVDEFVTHNMGLDKI 103



 Score = 54.8 bits (126), Expect = 7e-08
 Identities = 24/28 (85%), Positives = 26/28 (92%)
 Frame = +3

Query: 426 VLVDLTDGGLEYTFECIGNVGTMRAALE 509
           VLVD+TDGGL+YTFECIGNV TMR ALE
Sbjct: 1   VLVDMTDGGLDYTFECIGNVHTMRQALE 28


>SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09)
          Length = 1084

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +2

Query: 476 WKCRHHESCTRAC 514
           WKCRHHE CT+ C
Sbjct: 434 WKCRHHE-CTKLC 445


>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6753

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
 Frame = +1

Query: 40   PDGTRRFRCKGQELYHFMGCSTFSQYTVVLEISLCKVAEAAPLDKVCL-LG----CGVPT 204
            PDG  R++C     Y    C+T+        I+ C  + A P D+VC+  G    CG P 
Sbjct: 878  PDG--RYKCTCTSRYKDENCTTY--------INECANSSACPADRVCINYGGGYLCGCPA 927

Query: 205  GY 210
            G+
Sbjct: 928  GF 929


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,495,600
Number of Sequences: 59808
Number of extensions: 468345
Number of successful extensions: 1168
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)