Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0293
         (747 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal prote...   121   5e-28
Z82276-1|CAB05238.1|  319|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 15 protein.
          Length = 204

 Score =  121 bits (292), Expect = 5e-28
 Identities = 50/69 (72%), Positives = 63/69 (91%)
 Frame = +2

Query: 44  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYV 223
           MGAY+Y+QE++RKK SD +R+LLR+R W YRQL+ +HR PRPTRP+KARRLGYRAKQG+V
Sbjct: 1   MGAYKYMQEIWRKKQSDALRYLLRIRTWHYRQLSAVHRVPRPTRPEKARRLGYRAKQGFV 60

Query: 224 VFRIRVRRG 250
           V+R+RVRRG
Sbjct: 61  VYRVRVRRG 69



 Score =  104 bits (249), Expect = 8e-23
 Identities = 44/80 (55%), Positives = 58/80 (72%)
 Frame = +1

Query: 256 KRPVAKGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFE 435
           KRPV KG TYGKPK+HGVN+LK  ++ Q++AE             +SYWVA+DS+YK++E
Sbjct: 72  KRPVCKGQTYGKPKTHGVNELKNAKSKQAVAEGRAGRRLGSLRVLNSYWVAEDSTYKFYE 131

Query: 436 VILVDPSHKAIRRDPKINWI 495
           V+L+DP HKAIRR+P   WI
Sbjct: 132 VVLIDPFHKAIRRNPDTQWI 151



 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 32/48 (66%), Positives = 36/48 (75%)
 Frame = +3

Query: 510 KHREMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 653
           KHRE RGLTSAGR SRGLGKG R+S T+GGS+   W R+NT    RKR
Sbjct: 157 KHREQRGLTSAGRKSRGLGKGWRFSATRGGSQAKNWKRKNTKVFHRKR 204


>Z82276-1|CAB05238.1|  319|Caenorhabditis elegans Hypothetical
           protein K03D3.1 protein.
          Length = 319

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -2

Query: 521 LTMLSTAFTIQLILGSRRMALCDGSTR-ITSKYLY 420
           L  LST F I +I+ +RR++  D + + +  KY+Y
Sbjct: 200 LLFLSTVFYIPIIISARRLSHVDSAQQCMVQKYIY 234


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,562,965
Number of Sequences: 27780
Number of extensions: 361846
Number of successful extensions: 904
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)