Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0292
(779 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 100 5e-22
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 57 3e-09
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 56 6e-09
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 47 3e-06
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 46 8e-06
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 45 1e-05
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 45 1e-05
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 44 2e-05
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 44 2e-05
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 43 6e-05
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 40 3e-04
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 39 0.001
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 36 0.005
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 36 0.007
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 35 0.015
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 34 0.026
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 33 0.035
SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe... 33 0.046
SPCC1753.03c |rec7||meiotic recombination protein Rec7 |Schizosa... 32 0.11
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 30 0.32
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 30 0.43
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 29 0.75
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 29 0.99
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 28 1.3
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 28 1.3
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 28 1.3
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 2.3
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 27 2.3
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 3.0
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 27 3.0
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 27 3.0
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 27 4.0
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c... 26 5.3
SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomy... 26 5.3
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 26 5.3
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 26 5.3
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 26 5.3
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 5.3
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch... 26 5.3
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 26 7.0
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 26 7.0
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c... 25 9.2
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 25 9.2
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 25 9.2
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 9.2
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 9.2
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 99.5 bits (237), Expect = 5e-22
Identities = 47/69 (68%), Positives = 58/69 (84%), Gaps = 1/69 (1%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 178
+ EF+ FGTITSAK+M E G+SKGFGFVC+++PEEA KAVTEMN R++ KPLYVALAQ
Sbjct: 381 KAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQ 440
Query: 179 RKEDRKAHL 205
RKE R++ L
Sbjct: 441 RKEVRRSQL 449
Score = 50.8 bits (116), Expect = 2e-07
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Frame = +2
Query: 11 FAPFGTITSAKVMLEDG-RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 187
F FG ITS ++ + + +GFGFV +++ E A KAV E+N + K LYV AQ+K
Sbjct: 281 FGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKH 340
Query: 188 DRKAHL 205
+R+ L
Sbjct: 341 EREEEL 346
Score = 50.4 bits (115), Expect = 3e-07
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Frame = +2
Query: 11 FAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 187
F+ FG I S KV +++ G +KG+GFV F S E A A+ +NG ++ K +YV +
Sbjct: 188 FSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRR 247
Query: 188 DRKA 199
+R++
Sbjct: 248 ERQS 251
Score = 44.0 bits (99), Expect = 2e-05
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = +3
Query: 540 RPPLVSQSSRPANYKYTPNMRNPPAPQPAVHIQGQ-EPLTSTMLAAAPLQEQKQMLGERL 716
R P+ +Q RP + P + + G E T+ LAA P + +KQ+LGE L
Sbjct: 535 RGPVPAQG-RPMMMPGSVPSAGPAEAEAVPAVPGMPERFTAADLAAVPEESRKQVLGELL 593
Query: 717 FPLIQRMHPDLAGKIMGMLLE 779
+P + L+GKI GMLLE
Sbjct: 594 YPKVFVREEKLSGKITGMLLE 614
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 56.8 bits (131), Expect = 3e-09
Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Frame = +2
Query: 11 FAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 184
F+PFG+I S+ + G SKG+GFV F E A +A +NG +VG K ++V A+RK
Sbjct: 404 FSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAKDTLNGMMVGKKRIFVCFAERK 463
Query: 185 EDR 193
DR
Sbjct: 464 SDR 466
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 56.0 bits (129), Expect = 6e-09
Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Frame = +2
Query: 11 FAPFGTITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 184
F+ FG I S + SKG+GFV FS P EA +A+ +NG + G K L+V A+++
Sbjct: 441 FSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFVNYAEKR 500
Query: 185 EDRKAHLT 208
EDRK L+
Sbjct: 501 EDRKKRLS 508
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 47.2 bits (107), Expect = 3e-06
Identities = 23/56 (41%), Positives = 35/56 (62%)
Frame = +2
Query: 29 ITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 196
I K+ E R +GFGFV F++ E+ ++A+ EMNG+ VG L V A +ED++
Sbjct: 245 IRRIKLRGEQRRGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFREDKQ 300
Score = 28.7 bits (61), Expect = 0.99
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +2
Query: 71 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 193
G FV F++ E+ KA+ +NG+ + + + V A+ +++
Sbjct: 90 GIAFVTFNNQEDVDKAIETLNGKTLDDREIVVQKARPVQEQ 130
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 45.6 bits (103), Expect = 8e-06
Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Frame = +2
Query: 11 FAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 181
F+ FGT+T ++M E S+GFGF+ FS+ EEAT A+ +N + + L V A+R
Sbjct: 121 FSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKAKR 179
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 45.2 bits (102), Expect = 1e-05
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Frame = +2
Query: 11 FAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 184
F+ G + A + D GRSKG+GFV + S E A A+ MN + + KP+ V+ A ++
Sbjct: 119 FSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKR 178
Query: 185 EDR 193
E +
Sbjct: 179 EGK 181
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 44.8 bits (101), Expect = 1e-05
Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 7/54 (12%)
Frame = +2
Query: 5 KEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVT-----EMNGRIV 145
+EF +GTI A+V+++ GRSKG+G+V F +PE A AV E++GR+V
Sbjct: 281 QEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMV 334
Score = 37.1 bits (82), Expect = 0.003
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +2
Query: 53 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKP 157
+ GR KGFG+V FS + A K V EMNG + +P
Sbjct: 402 QSGRLKGFGYVTFSDIDSAKKCV-EMNGHFIAGRP 435
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 44.0 bits (99), Expect = 2e-05
Identities = 18/56 (32%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Frame = +2
Query: 11 FAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 175
F+ + ++ KV+ + +G+++GFGFV F ++ KA E NG+ +G++P+ ++ A
Sbjct: 50 FSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREKNGKYIGSRPVKLSRA 105
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 44.0 bits (99), Expect = 2e-05
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Frame = +2
Query: 20 FGTITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 193
+ + SAK+M + S+G+GFV F+ + A+ EM G+I G +P+ V LA K
Sbjct: 210 YNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKS-- 267
Query: 194 KAHL 205
KAH+
Sbjct: 268 KAHV 271
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 42.7 bits (96), Expect = 6e-05
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +2
Query: 11 FAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 175
F G++ A++ E GRSKGFG V F + +A ++ ++NG G +PL ++ A
Sbjct: 300 FTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLNGYRYGGRPLQLSYA 355
Score = 30.3 bits (65), Expect = 0.32
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +2
Query: 11 FAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 187
F G++ A + + ++GRS+G G V SS +EA A+ ++ + L V L
Sbjct: 203 FRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNTDFMGRTLEVRL----- 257
Query: 188 DRKAH 202
DR AH
Sbjct: 258 DRFAH 262
Score = 26.6 bits (56), Expect = 4.0
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Frame = +2
Query: 5 KEF-APFGTITSAKVM-LEDGRSKGFGFVCFSSPEEATKAV-TEMNGRIVG 148
KEF G + + +++ L +G SKG + +S+ EEA A+ T N + +G
Sbjct: 83 KEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTLSNQKFMG 133
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 40.3 bits (90), Expect = 3e-04
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +2
Query: 11 FAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 184
F PFG I + +D RSKGFG++ + +P A A+ +MNG + + + V L K
Sbjct: 360 FEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNGFDLAGRNMRVCLGNDK 418
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 38.7 bits (86), Expect = 0.001
Identities = 21/53 (39%), Positives = 28/53 (52%)
Frame = +2
Query: 11 FAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 169
F PFG I + K+ KG GFV +S A KA+ M G +VGT + +A
Sbjct: 317 FQPFGRILNIKIPF----GKGCGFVQYSEKSAAEKAINTMQGALVGTSHIRLA 365
Score = 38.3 bits (85), Expect = 0.001
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Frame = +2
Query: 20 FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 184
+ + TSAK++++ G S+ +GFV FSS +E A+ M G + +PL +++A K
Sbjct: 206 YPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPK 262
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 36.3 bits (80), Expect = 0.005
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = +2
Query: 56 DGRSKGFGFVCFSSPEEATKAVTEMNGRIV-GTKPLYVAL 172
+GRSKG + FS P +AT+A + GR+V GT+ + V +
Sbjct: 92 NGRSKGIATIIFSRPGDATRAYEQYEGRLVDGTRKMKVEI 131
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 35.9 bits (79), Expect = 0.007
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = +2
Query: 23 GTITSAKVMLED---GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 160
G + AKV E GRSKGFGF+ F S + A A+ +NGR + K +
Sbjct: 521 GVLKQAKVETEKAGAGRSKGFGFMQFISHKYALMALRWLNGREITVKKI 569
Score = 33.5 bits (73), Expect = 0.035
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +2
Query: 11 FAPFGTITSAKVMLEDG-RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 187
F+ FG + K+ + G R GF FV + A +A+ +NG + +P+ V A K+
Sbjct: 128 FSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWAVSKD 187
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 34.7 bits (76), Expect = 0.015
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE---MNGRIVGTK 154
R F FG + VM + GRS+GFGF+ F +P+ + +++ ++G+I+ K
Sbjct: 180 RDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEHHLDGKIIDPK 235
Score = 32.7 bits (71), Expect = 0.061
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 175
R F FG + A +M++ GR +GFGFV + + E A +A + KP+ V A
Sbjct: 264 RNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYEN-ESAVEATMSQPYITIHGKPVEVKRA 322
Query: 176 QRKED-RKAH 202
K R +H
Sbjct: 323 TPKASLRDSH 332
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 33.9 bits (74), Expect = 0.026
Identities = 16/59 (27%), Positives = 34/59 (57%)
Frame = +2
Query: 11 FAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 187
F +G + S ++ + KGFG+V ++ ++A A++ G+ +G + L V L++ +E
Sbjct: 777 FRDYGQVESVRIPKRFNQHKGFGYVVMTTNQDAENALSAA-GKQLGNRVLNVVLSKPRE 834
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 33.5 bits (73), Expect = 0.035
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +2
Query: 11 FAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 166
F G + S ++++ E G+ KG+GF + P A AV +N GT+ L V
Sbjct: 25 FKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNLNNYDAGTRRLRV 78
>SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 33.1 bits (72), Expect = 0.046
Identities = 18/59 (30%), Positives = 32/59 (54%)
Frame = +1
Query: 253 GQIFQPSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQ 429
GQ QPSG++GF + + ++ AQ +P+T + + P + +T+ +S AN Q
Sbjct: 188 GQSTQPSGSTGFGLSNNTQTTPFFSAAQQ---QPSTTQLPSNPAINATTRYSSLNANTQ 243
>SPCC1753.03c |rec7||meiotic recombination protein Rec7
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 339
Score = 31.9 bits (69), Expect = 0.11
Identities = 24/102 (23%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
Frame = +3
Query: 429 THLQTSTESSGPIYNKNIVRCKT-HNWTQGVAAAAASIRPPLVSQSSRPANYKYTPNMRN 605
T +++ T S P +++N+V + N + + A+ + P+++ + P N + +
Sbjct: 223 TSIESITASQQPTWDENVVITSSPFNPNRNAYSYGANSQYPIIAAT--PLNSQTQASWVA 280
Query: 606 PPAPQPAVHIQGQEPLTSTMLAAAPLQEQKQMLGERLFPLIQ 731
P Q ++ P TS +L +E+KQ+ + LF L Q
Sbjct: 281 QPENQAYANLIPSPPTTSQILPTELTEEEKQLRSKVLFYLKQ 322
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 30.3 bits (65), Expect = 0.32
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +2
Query: 20 FGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 130
FG ++S+K ++ E KG+GF CF + A ++ M
Sbjct: 319 FGKVSSSKAIIDMETNLCKGYGFACFEEEKSALICISAM 357
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 29.9 bits (64), Expect = 0.43
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +2
Query: 65 SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 205
S GFGFV F A A+ MNG ++ L + L+ + D A +
Sbjct: 664 SMGFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEV 710
Score = 29.1 bits (62), Expect = 0.75
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +2
Query: 53 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV--ALAQRKEDRK 196
++G S+ F F+ F + E+A KA+ +N V T + V AL R + K
Sbjct: 41 KEGVSRRFAFIGFKNEEDADKAIRYLNKSYVETSRIEVHRALDYRSANEK 90
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 29.1 bits (62), Expect = 0.75
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +2
Query: 11 FAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 154
FA FG + + + L+ G KG+ + +++ E+A KAV E N ++ K
Sbjct: 30 FADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEKNLSLLDEK 79
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 28.7 bits (61), Expect = 0.99
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +1
Query: 328 PAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQP---TYRPAPRAPAQSTIRTSLGARP 498
PA + P ++ P P + AASAY++ P R P APA ++ SL ++P
Sbjct: 218 PASPKSVSPDLVYVSSDNP--PVSTAASAYSSSLPISDVTRALPLAPASNSQHPSLSSQP 275
Query: 499 IT 504
++
Sbjct: 276 VS 277
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 28.3 bits (60), Expect = 1.3
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +2
Query: 590 TKHAQPTSSTTSSA--YPRTRTSDLYYACSSTTPGTETDAWGTTVSTYS 730
+ H QPTS+T+SS+ YP +R + A SS++P + TT S S
Sbjct: 236 SSHLQPTSATSSSSRLYP-SRPAPTPPASSSSSPLLSSQTVKTTTSNAS 283
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 28.3 bits (60), Expect = 1.3
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVM-LED-GRSKGFGFVCFSSPEEATKAV 121
++ F G I ++M ED G+ KGFGFV F + KA+
Sbjct: 245 KEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAM 286
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 8 EFAPFGTITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEMNGR 139
EF PFG + + + R S+ F FV + +A A E++GR
Sbjct: 26 EFEPFGPLIRCDIPIPRTRTSRPFAFVEYEDSRDAEDAYYEVHGR 70
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 2.3
Identities = 21/68 (30%), Positives = 25/68 (36%)
Frame = +1
Query: 295 PSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTI 474
PSLPP+ P P P PP+ AA P PAP APA +
Sbjct: 429 PSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAP-APAPAAP 487
Query: 475 RTSLGARP 498
S+ P
Sbjct: 488 VASIAELP 495
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 522 AAAASIRPPLVSQSSRPANYKYTPNMRNPPAPQP 623
A ++ +PPL SSR + N + PP P P
Sbjct: 283 AINSTSKPPLPPPSSRVSAAALAANKKRPPPPPP 316
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 534 SIRPPLVSQSSRPANYKYTPNMRNPPAPQPAVHIQGQE 647
SI P++S +R + ++ PN N P A + G+E
Sbjct: 132 SIENPVLSFITRKGSSRHAPNNSNIQPPSAAPPVPGKE 169
Score = 25.4 bits (53), Expect = 9.2
Identities = 23/78 (29%), Positives = 31/78 (39%)
Frame = +1
Query: 268 PSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPA 447
PS + P+ PP P P M +T ++PP+ P + SA A RP
Sbjct: 259 PSNGTVSSPPNSPPRP--IAPVSMNPAINST----SKPPLPPPSSRVSAAALAANKKRPP 312
Query: 448 PRAPAQSTIRTSLGARPI 501
P P R + G PI
Sbjct: 313 PPPPPS---RRNRGKPPI 327
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 53 EDGRSKGFGFVCFSSPEEATKAVTEMNG 136
++G +G F F SPEEA V +NG
Sbjct: 268 DNGVFRGLAFANFHSPEEAKTVVQVLNG 295
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +1
Query: 352 PTTPRWNAQPPVRPSTQAASAYANMQPTY--RPAPRAPAQS 468
P TP +PP ST++ ++M +Y P+P +P+ +
Sbjct: 276 PATPSQPPRPPTNASTRSTGTSSSMAHSYDSPPSPSSPSDA 316
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 27.1 bits (57), Expect = 3.0
Identities = 24/106 (22%), Positives = 45/106 (42%), Gaps = 2/106 (1%)
Frame = +3
Query: 294 TIAPSSTTLLWTSSNDSNKTYNSKVECTAPCKA*HTSSICICKYATHLQTSTESSGPIYN 473
T A S+++ T S+ S + +S + P + TSSI ++ +S SSG I +
Sbjct: 137 TSASSTSSSTATPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSSSASSSGSISS 196
Query: 474 KN--IVRCKTHNWTQGVAAAAASIRPPLVSQSSRPANYKYTPNMRN 605
+ V +++ G + + S SS + Y+ + N
Sbjct: 197 ADAKTVSASSNSTISGFSTSTTSASSSAAGNSSSSSYTSYSGAVSN 242
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 27.1 bits (57), Expect = 3.0
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +1
Query: 376 QPPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRTSLGARPI 501
QP + P Q + T++P PR P Q + T RP+
Sbjct: 700 QPTLHPQGQLPIQNVEQRATHKPLPRPPVQ--VETREPVRPV 739
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 53 EDGRSKGFGFVCFSSPEEATKAVTEMNG 136
E GR+KGF FV + + A KA ++G
Sbjct: 238 ETGRAKGFAFVSYYDRDCAIKARDRLDG 265
>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 649
Score = 26.2 bits (55), Expect = 5.3
Identities = 14/56 (25%), Positives = 27/56 (48%)
Frame = +3
Query: 546 PLVSQSSRPANYKYTPNMRNPPAPQPAVHIQGQEPLTSTMLAAAPLQEQKQMLGER 713
PL S++ ++ PN R+ +V + +EP + + A PL + + L +R
Sbjct: 12 PLESENESSLTSRFLPNKRDGGKDNESVIPEKEEPDLNEPVLAVPLPKSRYALTKR 67
>SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 166
Score = 26.2 bits (55), Expect = 5.3
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 379 PPVRPSTQAASAYANMQPTYRP 444
P VRP+ +AAS+Y +P++ P
Sbjct: 134 PKVRPARRAASSYVPSRPSHVP 155
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 26.2 bits (55), Expect = 5.3
Identities = 18/69 (26%), Positives = 37/69 (53%)
Frame = +2
Query: 533 IYSSTFSISKQSPSQL*IYTKHAQPTSSTTSSAYPRTRTSDLYYACSSTTPGTETDAWGT 712
+ S+T S S SPS T P+SS++SS+ + +S + SS++ + + + +
Sbjct: 132 VSSTTSSSSSSSPSSS-STTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 190
Query: 713 TVSTYSENA 739
+ S+ S ++
Sbjct: 191 SSSSSSSSS 199
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 573 ANYKYTPNMRNPPAPQPAVHIQGQEPL 653
AN + T NMR+P +HIQ +EP+
Sbjct: 815 ANCEKTNNMRDPLTSTIFLHIQPKEPI 841
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 26.2 bits (55), Expect = 5.3
Identities = 13/52 (25%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Frame = +2
Query: 29 ITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 178
+TS +++++ RS+GFG+V F + + + A+ ++G + +P+ + +A+
Sbjct: 118 VTSIRLVIDPLTERSRGFGYVEFETADTLSAALA-LSGEDLMGRPVRITVAE 168
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.2 bits (55), Expect = 5.3
Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Frame = +3
Query: 420 KYATHLQTSTESSGPIYNKNIVRCKTHNWTQGVAAAAASIRP-PLVSQSSRPANYKYTPN 596
+++ H++ + S I + KT + + + + S P PL+ S +
Sbjct: 669 QFSYHVEPNILSGSGIPVRVHTPSKTEDLDESFSGSEISSSPSPLLPDVSDTVEEQQKLL 728
Query: 597 MRNPPAPQPAVHIQGQEPLTSTMLAAAPL 683
+++PP P PAV + P + AP+
Sbjct: 729 LKSPPPPPPAVIVPTPAPAPIPVPPPAPI 757
>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 515
Score = 26.2 bits (55), Expect = 5.3
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = +2
Query: 557 SKQSPSQL*IYTKHAQPTSSTTSSAYPRTRTSDLYYACSSTTPGTETDAW--GTTVSTYS 730
S QSP+ + A + ST +S + +S YA S T+P + T + G+ + S
Sbjct: 95 SSQSPTSPHPSNQPAMLSPSTAASQHHHHHSSSSSYAVSPTSPTSPTSSGPIGSNFDSAS 154
Query: 731 E-NAP*FGWENNG 766
E N P + + G
Sbjct: 155 EHNGPVYPQDQQG 167
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 53 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 166
++G +G F F PEEA V +NG + + L V
Sbjct: 238 DNGIFRGLAFANFYRPEEAQVVVQTLNGYEINGRRLRV 275
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 584 IYTKHAQPTSSTTSSAYPRTRTSD 655
+YT H PT+ SSA P +T D
Sbjct: 1266 LYTIHQVPTTQRESSALPSDKTFD 1289
>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 25.4 bits (53), Expect = 9.2
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 507 TQGVAAAAA-SIRPPLVSQSSRPANYKYTPNMRNPP 611
TQ V A++A S P +Q SRPA P+ PP
Sbjct: 549 TQSVLASSAPSAGRPAAAQISRPAQLFRIPSTNPPP 584
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 25.4 bits (53), Expect = 9.2
Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Frame = +1
Query: 295 PSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAY--ANMQPTYRPAPRAPAQS 468
P PP + Y PA + P + A PP + AY A QP P S
Sbjct: 206 PPPPPPQQNYPPAASSSAPPMQYQQTAYPPQQAPYPPVQAYPQAPQQPIVVAQPTEHKHS 265
Query: 469 TIRTSLGA 492
+ +G+
Sbjct: 266 STFKKIGS 273
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 584 IYTKHAQPTSSTTSSAYPRTRTSDLYYACSSTTP 685
++ + S TSS+ P++RTS+L S TP
Sbjct: 78 VFNSTSTTLPSATSSSVPQSRTSELSSTNSIPTP 111
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.4 bits (53), Expect = 9.2
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = +2
Query: 539 SSTFSISKQSPSQL*IYTKHAQPTSSTTSSAYPRTRTSDLYYACSSTTPGTETDAWGTTV 718
SS ++ K++ + T A +S T+SSA + TS A SST T +++
Sbjct: 50 SSVPTLLKRATTSYNYNTSSASSSSLTSSSAASSSLTSSSSLASSSTNSTTSASPTSSSL 109
Query: 719 STYS 730
++ S
Sbjct: 110 TSSS 113
Score = 25.4 bits (53), Expect = 9.2
Identities = 26/69 (37%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +2
Query: 539 SSTFSISKQSPSQL*IYTKHAQPTSSTTSSAYPRTRTSDLYYACS--STTPGTETDAWGT 712
SST S S S S T A PTSS TSS+ T S+ + S S++ + T A T
Sbjct: 152 SSTTSSSLASSSTN--STTSATPTSSATSSSLSSTAASNSATSSSLASSSLNSTTSATAT 209
Query: 713 TVSTYSENA 739
+ S S A
Sbjct: 210 SSSLSSTAA 218
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.4 bits (53), Expect = 9.2
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Frame = +3
Query: 528 AASIRPPLVSQSSRPANYKYTPNMRNPPAPQPAVHI------QGQEPLTSTMLAAAPL 683
A S PP+ + S P K P++ PP P+P+V + G P+ +AA P+
Sbjct: 1078 APSGAPPVPAPSGIPPVPK--PSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPV 1133
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,498,057
Number of Sequences: 5004
Number of extensions: 78919
Number of successful extensions: 380
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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