Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0292
(779 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 104 8e-23
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 97 1e-20
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 91 6e-19
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 90 2e-18
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 89 4e-18
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 88 7e-18
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 83 2e-16
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 73 2e-13
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 54 1e-07
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 54 1e-07
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 53 2e-07
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 52 6e-07
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 50 1e-06
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 50 1e-06
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 50 2e-06
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 49 4e-06
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 49 4e-06
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 49 4e-06
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 49 4e-06
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 48 7e-06
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 48 7e-06
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 47 1e-05
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 47 1e-05
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 47 2e-05
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 47 2e-05
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 46 2e-05
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 46 2e-05
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 46 3e-05
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 46 3e-05
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 46 3e-05
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 46 3e-05
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 46 4e-05
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 45 5e-05
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 45 7e-05
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 45 7e-05
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 45 7e-05
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 45 7e-05
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 44 9e-05
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 44 9e-05
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 44 1e-04
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 44 1e-04
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 44 2e-04
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 43 2e-04
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 43 2e-04
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 43 2e-04
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 43 2e-04
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 43 2e-04
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 43 3e-04
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 43 3e-04
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 43 3e-04
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 43 3e-04
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 43 3e-04
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 43 3e-04
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 43 3e-04
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 42 3e-04
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 42 3e-04
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 42 3e-04
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 42 3e-04
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 42 3e-04
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 42 5e-04
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 42 5e-04
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 42 5e-04
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 42 5e-04
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 42 5e-04
At3g19350.1 68416.m02455 polyadenylate-binding protein-related /... 42 6e-04
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 42 6e-04
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 42 6e-04
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 41 8e-04
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 41 0.001
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 41 0.001
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 40 0.001
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 40 0.001
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 40 0.001
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 40 0.001
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 40 0.002
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 40 0.002
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 40 0.002
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 39 0.003
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 39 0.004
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 39 0.004
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 39 0.004
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 39 0.004
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 39 0.004
At5g51300.2 68418.m06360 splicing factor-related contains simila... 38 0.006
At5g51300.1 68418.m06359 splicing factor-related contains simila... 38 0.006
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 38 0.006
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 38 0.006
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 38 0.007
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 38 0.007
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 38 0.007
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 38 0.007
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 38 0.007
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 37 0.013
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 37 0.013
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 37 0.013
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 37 0.017
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 37 0.017
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 37 0.017
At4g28300.2 68417.m04053 hydroxyproline-rich glycoprotein family... 37 0.017
At4g28300.1 68417.m04052 hydroxyproline-rich glycoprotein family... 37 0.017
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 37 0.017
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 36 0.023
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 36 0.023
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 36 0.030
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 36 0.030
At4g38080.1 68417.m05378 hydroxyproline-rich glycoprotein family... 36 0.040
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 36 0.040
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 35 0.053
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 35 0.053
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 35 0.053
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 35 0.053
At2g27380.1 68415.m03302 proline-rich family protein contains pr... 35 0.053
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 35 0.053
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 35 0.070
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 35 0.070
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 34 0.092
At2g43680.2 68415.m05430 calmodulin-binding family protein simil... 34 0.092
At2g43680.1 68415.m05429 calmodulin-binding family protein simil... 34 0.092
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 34 0.12
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 34 0.12
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 34 0.12
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 34 0.12
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 34 0.12
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 34 0.12
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 34 0.12
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 34 0.12
At3g10070.1 68416.m01207 transcription initiation factor IID (TF... 33 0.16
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 33 0.16
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 33 0.21
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 33 0.21
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 33 0.21
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 33 0.28
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 33 0.28
At3g04610.1 68416.m00493 KH domain-containing protein similar pu... 33 0.28
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 33 0.28
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 33 0.28
At1g20620.2 68414.m02577 catalase 3 (SEN2) almost identical to c... 33 0.28
At1g20620.1 68414.m02578 catalase 3 (SEN2) almost identical to c... 33 0.28
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 32 0.37
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 32 0.49
At1g30480.1 68414.m03726 DNA-damage-repair/toleration protein, c... 32 0.49
At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing ... 32 0.49
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 32 0.49
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 31 0.65
At3g08670.1 68416.m01007 expressed protein 31 0.65
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 31 0.86
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 31 0.86
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 31 0.86
At3g48830.1 68416.m05333 polynucleotide adenylyltransferase fami... 31 0.86
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 31 0.86
At1g45100.1 68414.m05170 polyadenylate-binding protein, putative... 31 0.86
At1g23540.1 68414.m02960 protein kinase family protein contains ... 31 0.86
At5g19810.1 68418.m02354 proline-rich extensin-like family prote... 31 1.1
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 31 1.1
At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3) ... 31 1.1
At5g40560.1 68418.m04922 DegP protease, putative contains simila... 30 1.5
At4g14220.1 68417.m02194 zinc finger (C3HC4-type RING finger) fa... 30 1.5
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 30 1.5
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 30 1.5
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 30 1.5
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 30 1.5
At3g04670.1 68416.m00500 WRKY family transcription factor simila... 30 1.5
At1g76930.2 68414.m08956 proline-rich extensin-like family prote... 30 1.5
At1g76930.1 68414.m08955 proline-rich extensin-like family prote... 30 1.5
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 30 1.5
At1g68720.1 68414.m07851 cytidine/deoxycytidylate deaminase fami... 26 1.7
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro... 30 2.0
At5g13260.1 68418.m01523 expressed protein 30 2.0
At5g04970.1 68418.m00526 pectinesterase, putative contains simil... 30 2.0
At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid t... 30 2.0
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 30 2.0
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 30 2.0
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 29 2.6
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex... 29 2.6
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 29 2.6
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 29 2.6
At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid t... 29 3.5
At4g16280.1 68417.m02469 flowering time control protein / FCA ga... 29 3.5
At3g07100.1 68416.m00845 protein transport protein Sec24, putati... 29 3.5
At1g23720.1 68414.m02994 proline-rich extensin-like family prote... 29 3.5
At5g14420.4 68418.m01687 copine-related low similarity to SP|Q99... 29 4.6
At5g14420.3 68418.m01686 copine-related low similarity to SP|Q99... 29 4.6
At5g14420.2 68418.m01685 copine-related low similarity to SP|Q99... 29 4.6
At5g14420.1 68418.m01684 copine-related low similarity to SP|Q99... 29 4.6
At4g34150.1 68417.m04846 C2 domain-containing protein similar to... 29 4.6
At1g72760.1 68414.m08413 protein kinase family protein contains ... 29 4.6
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 29 4.6
At1g26150.1 68414.m03192 protein kinase family protein similar t... 29 4.6
At1g10620.1 68414.m01204 protein kinase family protein contains ... 29 4.6
At5g66840.1 68418.m08427 SAP domain-containing protein contains ... 28 6.0
At5g14920.1 68418.m01750 gibberellin-regulated family protein si... 28 6.0
At5g13530.1 68418.m01562 protein kinase family protein / ankyrin... 28 6.0
At5g07820.1 68418.m00896 expressed protein 28 6.0
At4g31210.1 68417.m04432 DNA topoisomerase family protein simila... 28 6.0
At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid t... 28 6.0
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 28 6.0
At2g21235.1 68415.m02522 bZIP protein-related similar to VirE2-i... 28 6.0
At1g11130.1 68414.m01274 leucine-rich repeat family protein / pr... 28 6.0
At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil... 28 8.0
At5g06640.1 68418.m00750 proline-rich extensin-like family prote... 28 8.0
At5g04130.2 68418.m00400 DNA topoisomerase, ATP-hydrolyzing, put... 28 8.0
At5g04130.1 68418.m00399 DNA topoisomerase, ATP-hydrolyzing, put... 28 8.0
At4g13390.1 68417.m02092 proline-rich extensin-like family prote... 28 8.0
At3g28930.1 68416.m03613 avrRpt2-induced AIG2 protein (AIG2) ide... 28 8.0
At3g28550.1 68416.m03565 proline-rich extensin-like family prote... 28 8.0
At3g25240.1 68416.m03153 hypothetical protein contains Pfam prof... 28 8.0
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 28 8.0
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 28 8.0
At2g31090.1 68415.m03797 expressed protein 28 8.0
At2g26130.1 68415.m03135 zinc finger (C3HC4-type RING finger) fa... 28 8.0
At1g79350.1 68414.m09247 DNA-binding protein, putative contains ... 28 8.0
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 104 bits (249), Expect = 8e-23
Identities = 50/69 (72%), Positives = 59/69 (85%), Gaps = 1/69 (1%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 178
R+ FAPFGTITS KVM + G S+G GFV FS+PEEAT+A+TEMNG+++ TKPLYVALAQ
Sbjct: 344 REHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQ 403
Query: 179 RKEDRKAHL 205
RKEDRKA L
Sbjct: 404 RKEDRKARL 412
Score = 58.8 bits (136), Expect = 4e-09
Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Frame = +2
Query: 5 KEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 181
K F FG TS +M + +G+SKGFGFV F + ++A +AV +NG+ K +V AQ+
Sbjct: 242 KVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQK 301
Query: 182 KEDRKAHL 205
K +R+ L
Sbjct: 302 KSERETEL 309
Score = 48.0 bits (109), Expect = 7e-06
Identities = 20/41 (48%), Positives = 31/41 (75%)
Frame = +3
Query: 657 STMLAAAPLQEQKQMLGERLFPLIQRMHPDLAGKIMGMLLE 779
+T LA A ++Q+ MLGE L+PL++++ P+ A K+ GMLLE
Sbjct: 578 ATRLANAAPEQQRTMLGENLYPLVEQLEPESAAKVTGMLLE 618
Score = 47.6 bits (108), Expect = 9e-06
Identities = 22/53 (41%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Frame = +2
Query: 11 FAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 166
F+ FG I S KV ++ G+SKG+GFV + + E A A+ ++NG ++ K +YV
Sbjct: 153 FSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYV 205
Score = 33.5 bits (73), Expect = 0.16
Identities = 16/59 (27%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = +2
Query: 11 FAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 181
F G + S +V + RS G+G+V +++P++A++A+ E+N + + + V + R
Sbjct: 65 FTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNELNFMALNGRAIRVMYSVR 123
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 97.1 bits (231), Expect = 1e-20
Identities = 42/69 (60%), Positives = 59/69 (85%), Gaps = 1/69 (1%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 178
++ F+ +G +TS+KVML G S+GFGFV +S+PEEA +A++EMNG+++G KPLY+ALAQ
Sbjct: 349 KEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQ 408
Query: 179 RKEDRKAHL 205
RKEDR+AHL
Sbjct: 409 RKEDRRAHL 417
Score = 59.7 bits (138), Expect = 2e-09
Identities = 33/69 (47%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 178
RK F FG I+SA VM + G S+ FGFV F E A AV +MNG +G LYV AQ
Sbjct: 246 RKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQ 305
Query: 179 RKEDRKAHL 205
+K +R+ L
Sbjct: 306 KKSEREEEL 314
Score = 54.8 bits (126), Expect = 6e-08
Identities = 26/62 (41%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Frame = +2
Query: 11 FAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 187
F+ FGTI S KV ++ GRSKG+GFV F E A A+ ++NG ++ K ++V R++
Sbjct: 156 FSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQ 215
Query: 188 DR 193
+R
Sbjct: 216 ER 217
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/43 (46%), Positives = 32/43 (74%)
Frame = +3
Query: 651 LTSTMLAAAPLQEQKQMLGERLFPLIQRMHPDLAGKIMGMLLE 779
LTS++ +A+P ++ +MLGE+L+PL++R P K+ GMLLE
Sbjct: 575 LTSSLASASPA-DRTRMLGEQLYPLVERHEPLHVAKVTGMLLE 616
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 91.5 bits (217), Expect = 6e-19
Identities = 41/69 (59%), Positives = 56/69 (81%), Gaps = 1/69 (1%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 178
++ F+ +G +TS KVM+ G S+GFGFV +S+PEEA A+ EMNG+++G KPLYVALAQ
Sbjct: 345 KEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQ 404
Query: 179 RKEDRKAHL 205
RKE+R+AHL
Sbjct: 405 RKEERQAHL 413
Score = 63.3 bits (147), Expect = 2e-10
Identities = 34/69 (49%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 178
+K F +G I+SA VM + G S+ FGFV F SPE A AV +MNG +G LYV AQ
Sbjct: 242 KKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQ 301
Query: 179 RKEDRKAHL 205
+K DR+ L
Sbjct: 302 KKSDREEEL 310
Score = 55.6 bits (128), Expect = 3e-08
Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Frame = +2
Query: 11 FAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 187
F+ FGTI S KV ++ GRSKG+GFV F E A A+ ++NG ++ K ++V R++
Sbjct: 152 FSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQ 211
Query: 188 DR 193
DR
Sbjct: 212 DR 213
Score = 40.3 bits (90), Expect = 0.001
Identities = 30/93 (32%), Positives = 44/93 (47%)
Frame = +3
Query: 501 NWTQGVAAAAASIRPPLVSQSSRPANYKYTPNMRNPPAPQPAVHIQGQEPLTSTMLAAAP 680
N G+ A+A PL +S AN P + P P L S + A+P
Sbjct: 536 NRRNGMEASAPQGIIPLPLNAS--ANSHNAPQRSHKPTPLTI------SKLASDLALASP 587
Query: 681 LQEQKQMLGERLFPLIQRMHPDLAGKIMGMLLE 779
+ +MLG+ L+PL+++ P A K+ GMLLE
Sbjct: 588 -DKHPRMLGDHLYPLVEQQEPANAAKVTGMLLE 619
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 89.8 bits (213), Expect = 2e-18
Identities = 39/66 (59%), Positives = 58/66 (87%), Gaps = 1/66 (1%)
Frame = +2
Query: 11 FAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 187
F+PFGT+TS+KVM + +G SKG GFV F++PEEAT+A+++++G+++ +KPLYVA+AQRKE
Sbjct: 152 FSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKE 211
Query: 188 DRKAHL 205
DR+ L
Sbjct: 212 DRRVRL 217
Score = 60.9 bits (141), Expect = 9e-10
Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 178
+ F +G ITSA VM + +G+SKGFGFV F + ++A +AV +NG K YV AQ
Sbjct: 46 KNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQ 105
Query: 179 RKEDRKAHL 205
+K +R+ L
Sbjct: 106 KKSERETEL 114
Score = 44.8 bits (101), Expect = 7e-05
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Frame = +3
Query: 546 PLVSQSSRPANYKYT-PNMRNPPAPQPAVHIQGQEPLTSTMLAA----APLQEQKQMLGE 710
P++ Q P + P R P + PLT LA+ A ++Q+ MLGE
Sbjct: 316 PMMQQQMHPRGRMFRYPQGRGGSGDVPPYDMGNNMPLTIGALASNLSNATPEQQRTMLGE 375
Query: 711 RLFPLIQRMHPDLAGKIMGMLLE 779
L+PL++++ + A K+ GMLLE
Sbjct: 376 VLYPLVEQVEAESAAKVTGMLLE 398
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 88.6 bits (210), Expect = 4e-18
Identities = 44/69 (63%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 178
R+ FA FGTITS KVM + G SKG GFV FS+ EA++ + EMNG++VG KPLYVALAQ
Sbjct: 345 RELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQ 404
Query: 179 RKEDRKAHL 205
RKE+R+A L
Sbjct: 405 RKEERRAKL 413
Score = 61.3 bits (142), Expect = 7e-10
Identities = 30/67 (44%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Frame = +2
Query: 11 FAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 187
F +G+I+SA VM + DG+S+ FGFV F +PE+A +AV +NG+ K YV AQ+K
Sbjct: 245 FGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKS 304
Query: 188 DRKAHLT 208
+R+ L+
Sbjct: 305 ERELELS 311
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/64 (37%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +2
Query: 11 FAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 187
F+ GTI S KV + G+S+G+GFV F + + A A+ ++NG+++ K ++V RKE
Sbjct: 154 FSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKE 213
Query: 188 DRKA 199
+R++
Sbjct: 214 ERES 217
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/41 (43%), Positives = 28/41 (68%)
Frame = +3
Query: 657 STMLAAAPLQEQKQMLGERLFPLIQRMHPDLAGKIMGMLLE 779
+T LA A +Q+ +LGE L+PL+ ++ + A K+ GMLLE
Sbjct: 563 ATSLANATPAQQRTLLGESLYPLVDQIESEHAAKVTGMLLE 603
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 87.8 bits (208), Expect = 7e-18
Identities = 42/69 (60%), Positives = 53/69 (76%), Gaps = 1/69 (1%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 178
RK F+ GTITS K+M ++ G+SKGFGFVCFS+PEEA AV +G++ KPLYVA+AQ
Sbjct: 321 RKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQ 380
Query: 179 RKEDRKAHL 205
+KEDRK L
Sbjct: 381 KKEDRKMQL 389
Score = 56.0 bits (129), Expect = 3e-08
Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 178
R++FA FG I S + ++ R +G+ FV F +PE+A +A +NG G+K LYV AQ
Sbjct: 218 REKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQ 277
Query: 179 RKEDRK 196
+K +R+
Sbjct: 278 KKAERE 283
Score = 55.6 bits (128), Expect = 3e-08
Identities = 28/62 (45%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Frame = +2
Query: 11 FAPFGTITSAKVM-LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 187
F FG I S KV LEDG+S+G+GFV F + A A+ +N IV K +YV +K
Sbjct: 132 FKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKT 191
Query: 188 DR 193
DR
Sbjct: 192 DR 193
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/30 (56%), Positives = 23/30 (76%)
Frame = +3
Query: 690 QKQMLGERLFPLIQRMHPDLAGKIMGMLLE 779
+ Q+LGE L PL++++ P LA KI GMLLE
Sbjct: 525 EMQLLGELLHPLVEKLEPQLANKITGMLLE 554
Score = 32.3 bits (70), Expect = 0.37
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +2
Query: 11 FAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 184
FA F ++TS ++ + GRS +G+ F S ++A A+ + N ++ K + V + R
Sbjct: 44 FAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVRA 103
Query: 185 EDRK 196
D +
Sbjct: 104 PDAR 107
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 83.4 bits (197), Expect = 2e-16
Identities = 41/66 (62%), Positives = 52/66 (78%), Gaps = 1/66 (1%)
Frame = +2
Query: 11 FAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 187
F+ FGTITS KVM+ +G SKG GFV FS+ EEA+KA+ +MNG++VG KP+YV+LAQ KE
Sbjct: 243 FSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLAQCKE 302
Query: 188 DRKAHL 205
K HL
Sbjct: 303 QHKLHL 308
Score = 59.7 bits (138), Expect = 2e-09
Identities = 32/69 (46%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 178
++ F FG ITSA VM + +G+S+ FGFV F E A A+ +MNG +V K L+V AQ
Sbjct: 136 KRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQ 195
Query: 179 RKEDRKAHL 205
RK +R L
Sbjct: 196 RKTNRTEDL 204
Score = 33.9 bits (74), Expect = 0.12
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 11 FAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 166
F+ FG + S KV + G SKG+GFV F S A NG ++ + ++V
Sbjct: 51 FSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHV 103
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 73.3 bits (172), Expect = 2e-13
Identities = 37/65 (56%), Positives = 48/65 (73%), Gaps = 1/65 (1%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 178
R+ F +G I SAKVM E+GRSKGFGFVCFS+ EE+ +A +NG +V KP+ V +A+
Sbjct: 321 REIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVAE 380
Query: 179 RKEDR 193
RKEDR
Sbjct: 381 RKEDR 385
Score = 59.3 bits (137), Expect = 3e-09
Identities = 29/63 (46%), Positives = 42/63 (66%)
Frame = +2
Query: 11 FAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 190
F PFG+I S KV+ E+G+SKGFGFV F + + A A + ++G +V K L+VA K++
Sbjct: 132 FCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDE 191
Query: 191 RKA 199
R A
Sbjct: 192 RAA 194
Score = 59.3 bits (137), Expect = 3e-09
Identities = 29/66 (43%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Frame = +2
Query: 11 FAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 187
F+ +GT++S VM + GRS+GFGFV F +PE A KA+ + G +G+K L+V A +K+
Sbjct: 222 FSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKD 281
Query: 188 DRKAHL 205
+R+ L
Sbjct: 282 ERREML 287
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 54.0 bits (124), Expect = 1e-07
Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Frame = +2
Query: 20 FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 184
+G++ AKV+L+ GRSKG+GFV F+ E +A+TEMNG+ T+P+ + A K
Sbjct: 178 YGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANK 234
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 54.0 bits (124), Expect = 1e-07
Identities = 26/68 (38%), Positives = 45/68 (66%), Gaps = 2/68 (2%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 175
R+ F+PFG I A+++ E R KGFGF+ F S ++A KA+ ++G+IV + ++V +A
Sbjct: 24 RQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSLDGKIVDGRLIFVEVA 83
Query: 176 QRKEDRKA 199
+ E+ +A
Sbjct: 84 KNAEEVRA 91
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 52.8 bits (121), Expect = 2e-07
Identities = 26/63 (41%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Frame = +2
Query: 5 KEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 178
K FA F T AKV+ + G++KG+GFV F +P + A+ EMNG+ VG +P+ + +
Sbjct: 155 KAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKEMNGKYVGNRPIKLRKSS 214
Query: 179 RKE 187
KE
Sbjct: 215 WKE 217
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 51.6 bits (118), Expect = 6e-07
Identities = 26/64 (40%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Frame = +2
Query: 11 FAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 184
FA FG + A+V+ + GRSKGFGFV +++ E+A KA EMN + + ++V A+ +
Sbjct: 54 FASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVDPARPR 113
Query: 185 EDRK 196
E R+
Sbjct: 114 EPRR 117
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 50.4 bits (115), Expect = 1e-06
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 175
++ F FG +T A V+ E GRS+GFGFV FS + A A+ EM+G+ + + + V LA
Sbjct: 52 KQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLA 111
Query: 176 QRK 184
+
Sbjct: 112 TER 114
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 50.4 bits (115), Expect = 1e-06
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 175
++ F FG +T A V+ E GRS+GFGFV FS + A A+ EM+G+ + + + V LA
Sbjct: 52 KQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLA 111
Query: 176 QRK 184
+
Sbjct: 112 TER 114
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 49.6 bits (113), Expect = 2e-06
Identities = 23/61 (37%), Positives = 40/61 (65%), Gaps = 2/61 (3%)
Frame = +2
Query: 11 FAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 184
F+ G + A+++++ RSKGFGFV F+S +EA KA+ E NG+ + + ++V A+ K
Sbjct: 54 FSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAKAK 113
Query: 185 E 187
+
Sbjct: 114 Q 114
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 48.8 bits (111), Expect = 4e-06
Identities = 24/48 (50%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGR 139
R FA FG + AKV++ E GRS+GFGFV F+ AT A++EM+G+
Sbjct: 52 RDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGK 99
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 48.8 bits (111), Expect = 4e-06
Identities = 24/48 (50%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGR 139
R FA FG + AKV++ E GRS+GFGFV F+ AT A++EM+G+
Sbjct: 52 RDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGK 99
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 48.8 bits (111), Expect = 4e-06
Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Frame = +2
Query: 14 APFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 187
A + ++ AKV+++ GR+KG+GFV FS E +A+TEMNG T+P+ + A K+
Sbjct: 177 ASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKK 236
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 48.8 bits (111), Expect = 4e-06
Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Frame = +2
Query: 14 APFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 187
A + ++ AKV+++ GR+KG+GFV FS E +A+TEMNG T+P+ + A K+
Sbjct: 177 ASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKK 236
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 48.0 bits (109), Expect = 7e-06
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Frame = +2
Query: 20 FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 190
+ ++ AKV+ + GRSKG+GFV F+ E +A+ EMNG T+P+ ++ A K++
Sbjct: 140 YSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKN 198
Score = 32.7 bits (71), Expect = 0.28
Identities = 15/56 (26%), Positives = 31/56 (55%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 169
+K F+ G + K+ +KG+G+V F + A +AV M G+++G + + ++
Sbjct: 254 KKAFSQLGEVIYVKIPA----TKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRIS 305
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 48.0 bits (109), Expect = 7e-06
Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Frame = +2
Query: 20 FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 184
+ ++ SAKV+++ GRSKG+GFV F E ++A+TEMNG + + V +A K
Sbjct: 226 YPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPK 282
Score = 36.3 bits (80), Expect = 0.023
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVG 148
R+ F+ FG + S K+ + KG GFV F+ + A A+ +NG ++G
Sbjct: 338 RQPFSQFGEVVSVKIPV----GKGCGFVQFADRKSAEDAIESLNGTVIG 382
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Frame = +2
Query: 14 APFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 187
A + ++ AKV+ + GRSKG+GFV F+ E +A+TEMNG+ ++P+ A K+
Sbjct: 195 AVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKK 254
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Frame = +2
Query: 20 FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 184
+ ++ AKV+++ GRSKG+GFV F E ++A+TEMNG ++ + V +A K
Sbjct: 237 YPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPK 293
Score = 35.5 bits (78), Expect = 0.040
Identities = 16/46 (34%), Positives = 28/46 (60%)
Frame = +2
Query: 11 FAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVG 148
F+ FG + S K+ + KG GFV F++ + A +A+ +NG ++G
Sbjct: 347 FSDFGEVVSVKIPV----GKGCGFVQFANRQSAEEAIGNLNGTVIG 388
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 46.8 bits (106), Expect = 2e-05
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Frame = +2
Query: 5 KEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 178
+ F+ FG I ++MLE GRS+GFGF+ F+ +++ EM+GR G + + V A+
Sbjct: 25 RAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREMHGRDFGDRVISVNRAE 84
Query: 179 RKEDR 193
K R
Sbjct: 85 PKLGR 89
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/52 (40%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Frame = +2
Query: 11 FAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 160
F+ F + + A+VM + GRS+GFGFV F + ++A A+ EMNG+ V ++ +
Sbjct: 168 FSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQI 219
Score = 32.7 bits (71), Expect = 0.28
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Frame = +2
Query: 11 FAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ---R 181
FA G I S K++ +D S +GFV + A+ A+ +NGR + +P+ V A +
Sbjct: 83 FASTGPIESCKLIRKDKSS--YGFVHYFDRRCASMAIMTLNGRHIFGQPMKVNWAYATGQ 140
Query: 182 KEDRKAH 202
+ED +H
Sbjct: 141 REDTSSH 147
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGR 139
R+ F +G + +V+L E GRS+GFGFV F+S E A+ A+ ++GR
Sbjct: 57 REAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGR 104
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 175
R FA FG + AKV+ + G SKGFGFV +++ E++ K + M+G+ + ++ A
Sbjct: 73 RTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEYA 132
Query: 176 QRKEDRKAH 202
+ +E +++
Sbjct: 133 RPREQSQSY 141
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 46.0 bits (104), Expect = 3e-05
Identities = 23/62 (37%), Positives = 37/62 (59%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 181
R+ FAPF + + + R KGFGF+ F S ++A KA+ +NG+IV + ++V A+
Sbjct: 88 RQLFAPFARLIKDQ---QTQRPKGFGFITFESEDDAQKALKALNGKIVNGRLIFVETAKE 144
Query: 182 KE 187
E
Sbjct: 145 VE 146
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 46.0 bits (104), Expect = 3e-05
Identities = 22/41 (53%), Positives = 30/41 (73%), Gaps = 2/41 (4%)
Frame = +2
Query: 20 FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 136
+ ++ +AKV+L+ GRSKG+GFV F E TKA+TEMNG
Sbjct: 223 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNG 263
Score = 34.7 bits (76), Expect = 0.070
Identities = 17/65 (26%), Positives = 37/65 (56%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 181
++ F+ FG I S K+ + KG GFV F + A +A+ ++NG ++G + + ++ +
Sbjct: 323 KQPFSEFGEIVSVKIPV----GKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRN 378
Query: 182 KEDRK 196
+++
Sbjct: 379 PANKQ 383
Score = 31.1 bits (67), Expect = 0.86
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +2
Query: 29 ITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 136
I S KV+ +G S+G+GFV F S + A K + E NG
Sbjct: 131 IVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQEFNG 168
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 46.0 bits (104), Expect = 3e-05
Identities = 22/41 (53%), Positives = 30/41 (73%), Gaps = 2/41 (4%)
Frame = +2
Query: 20 FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 136
+ ++ +AKV+L+ GRSKG+GFV F E TKA+TEMNG
Sbjct: 221 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNG 261
Score = 31.1 bits (67), Expect = 0.86
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +2
Query: 29 ITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 136
I S KV+ +G S+G+GFV F S + A K + E NG
Sbjct: 129 IVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNG 166
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 46.0 bits (104), Expect = 3e-05
Identities = 22/41 (53%), Positives = 30/41 (73%), Gaps = 2/41 (4%)
Frame = +2
Query: 20 FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 136
+ ++ +AKV+L+ GRSKG+GFV F E TKA+TEMNG
Sbjct: 221 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNG 261
Score = 33.5 bits (73), Expect = 0.16
Identities = 17/65 (26%), Positives = 36/65 (55%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 181
++ F FG I S K+ + KG GFV F + A +A+ ++NG ++G + + ++ +
Sbjct: 321 KQPFNEFGEIVSVKIPV----GKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRN 376
Query: 182 KEDRK 196
+++
Sbjct: 377 PANKQ 381
Score = 31.1 bits (67), Expect = 0.86
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +2
Query: 29 ITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 136
I S KV+ +G S+G+GFV F S + A K + E NG
Sbjct: 129 IVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNG 166
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 45.6 bits (103), Expect = 4e-05
Identities = 20/54 (37%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Frame = +2
Query: 5 KEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 160
+ F+ F + + A+VM + GRS+GFGFV F + ++A A+ EMNG+ + ++ +
Sbjct: 162 QSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQI 215
Score = 31.5 bits (68), Expect = 0.65
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Frame = +2
Query: 11 FAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ---R 181
F G + S+K++ +D S +GFV + A A+ +NGR + +P+ V A +
Sbjct: 79 FTSTGPVESSKLIRKDKSS--YGFVHYFDRRSAALAILSLNGRHLFGQPIKVNWAYATGQ 136
Query: 182 KEDRKAH 202
+ED +H
Sbjct: 137 REDTSSH 143
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 45.2 bits (102), Expect = 5e-05
Identities = 21/51 (41%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
Frame = +2
Query: 35 SAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 181
SA+V+ D GRS G+GFV F++ EEA A+T++NG+ + +P+ + + R
Sbjct: 223 SARVVFADPEGRSSGYGFVSFATREEAENAITKLNGKEIMGRPITLKFSLR 273
Score = 36.7 bits (81), Expect = 0.017
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Frame = +2
Query: 11 FAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 181
F GT+ + +++ + DG+++GF FV +S EEA A+ + + V + + V+ A+R
Sbjct: 115 FGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFARR 172
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 44.8 bits (101), Expect = 7e-05
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 175
++ F+ FG + +K++ E GRS+GFGFV F + A+ EMNG+ + + + V A
Sbjct: 23 QRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEA 82
Query: 176 QRK 184
Q +
Sbjct: 83 QSR 85
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 44.8 bits (101), Expect = 7e-05
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 175
++ F+ FG + +K++ E GRS+GFGFV F + A+ EMNG+ + + + V A
Sbjct: 23 QRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEA 82
Query: 176 QRK 184
Q +
Sbjct: 83 QSR 85
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 44.8 bits (101), Expect = 7e-05
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 175
++ F+ FG + +K++ E GRS+GFGFV F + A+ EMNG+ + + + V A
Sbjct: 23 QRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEA 82
Query: 176 QRK 184
Q +
Sbjct: 83 QSR 85
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 44.8 bits (101), Expect = 7e-05
Identities = 26/56 (46%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = +2
Query: 11 FAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 172
F FG + SAKV ++ G SK FGFV + S A A+ MNGR +G K L V L
Sbjct: 369 FQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDMMNGRHLGGKKLKVQL 424
Score = 31.1 bits (67), Expect = 0.86
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Frame = +2
Query: 11 FAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNG--RIVG-TKPLYVALAQ 178
F+ +GTI +++ SKG F+ + + E+A A+ +NG ++ G T PL V A
Sbjct: 126 FSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTVPLVVKWAD 185
Query: 179 RKEDR 193
+ +R
Sbjct: 186 TERER 190
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 44.4 bits (100), Expect = 9e-05
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +2
Query: 23 GTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 193
G + A+V+ + GRSKGFGFV SS +E KA+ +NG + + + V+ A+ + R
Sbjct: 273 GKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPPR 331
Score = 33.9 bits (74), Expect = 0.12
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +2
Query: 11 FAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 166
F G + +V+ + GRS+GFGFV S+ E A + NG +PL V
Sbjct: 119 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRV 172
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 44.4 bits (100), Expect = 9e-05
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +2
Query: 23 GTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 193
G + A+V+ + GRSKGFGFV SS +E KA+ +NG + + + V+ A+ + R
Sbjct: 281 GKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPPR 339
Score = 33.9 bits (74), Expect = 0.12
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +2
Query: 11 FAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 166
F G + +V+ + GRS+GFGFV S+ E A + NG +PL V
Sbjct: 119 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRV 172
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Frame = +2
Query: 11 FAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 184
F +G IT ++M+ + GR +GFGF+ F+ A A+ M+GR +G K + V A+ K
Sbjct: 32 FDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEPK 91
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Frame = +2
Query: 11 FAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 184
F +G IT ++M+ + GR +GFGF+ F+ A A+ M+GR +G K + V A+ K
Sbjct: 32 FDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEPK 91
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 43.6 bits (98), Expect = 2e-04
Identities = 19/61 (31%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 175
++EF+ FG I K++ ++ RSKG+ F+ F+S ++A A+ M+ R+ + +Y+ +A
Sbjct: 57 KREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETMDRRMYNGRMIYIDIA 116
Query: 176 Q 178
+
Sbjct: 117 K 117
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/49 (38%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRI 142
+K F+ FG +T+ K++ + +S G+G+V F+S E+A AV MNG++
Sbjct: 75 KKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMNGKV 123
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 175
+K F+ FG +T+ K++ + +S G+G+V F+S E+A AV MNG+ + + V
Sbjct: 94 KKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMNGKFFDGRFILVKFG 153
Query: 176 Q 178
Q
Sbjct: 154 Q 154
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Frame = +2
Query: 11 FAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 184
F+ FG + + V+ +D G S+GF F+ F S + A +A+ M+GR++G K L V +
Sbjct: 37 FSDFGKVIRS-VLAKDFRGESRGFAFIEFESADSAGRAMLHMDGRLIGQKILCVQRTPKV 95
Query: 185 ED 190
ED
Sbjct: 96 ED 97
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/66 (30%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Frame = +2
Query: 11 FAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 184
F+ G + A+V+ E GRS+GFGFV S +E +A++ ++G+ + + + V +A+ +
Sbjct: 264 FSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEER 323
Query: 185 EDRKAH 202
R+ +
Sbjct: 324 PPRRGY 329
Score = 34.3 bits (75), Expect = 0.092
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +2
Query: 11 FAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMN 133
F GT+ A+V+ E +S+GFGFV SS +EA AV + N
Sbjct: 170 FEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFN 212
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 175
R F +G + AKV+L+ GRS+GFGF+ F + +A+ MNG + + + V A
Sbjct: 24 RDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDKA 83
Query: 176 Q 178
Q
Sbjct: 84 Q 84
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 42.7 bits (96), Expect = 3e-04
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Frame = +2
Query: 11 FAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNG 136
F PFG +T V ++ S+GFGFV F S E+A +A+ ++NG
Sbjct: 194 FRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKLNG 237
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 42.7 bits (96), Expect = 3e-04
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Frame = +2
Query: 11 FAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNG 136
F PFG +T V ++ G S+GFGFV F S E+A +A+ ++NG
Sbjct: 233 FHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNG 276
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 42.7 bits (96), Expect = 3e-04
Identities = 20/48 (41%), Positives = 35/48 (72%), Gaps = 2/48 (4%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGR 139
R+ F+ +G + AK+++ E GRS+GF FV F+S EEA+ A+ +++G+
Sbjct: 51 REAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM-QLDGQ 97
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 42.7 bits (96), Expect = 3e-04
Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 7/59 (11%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAV-----TEMNGRIVGTKP 157
++ F FG I A V+L E G S+GFGFV + S E A A+ E++GRI+G P
Sbjct: 53 KEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAMQNKELDGRIIGVHP 111
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 42.7 bits (96), Expect = 3e-04
Identities = 19/52 (36%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Frame = +2
Query: 11 FAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 160
F+ + T + A+VM + GRS+GFGFV F + ++A A+ E+ G+ +G++ +
Sbjct: 159 FSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQI 210
Score = 29.9 bits (64), Expect = 2.0
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Frame = +2
Query: 11 FAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ---R 181
FA G + S K++ ++ S +GFV + A A+ +NGR + +P+ V A +
Sbjct: 74 FAGTGPVESCKLIRKEKSS--YGFVHYFDRRSAGLAILSLNGRHLFGQPIKVNWAYASGQ 131
Query: 182 KEDRKAH 202
+ED +H
Sbjct: 132 REDTSSH 138
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 42.7 bits (96), Expect = 3e-04
Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +2
Query: 11 FAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 172
F PFG + SAKV ++ G SK FGF+ + S A A+ MNG + K L V L
Sbjct: 359 FQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTMNGCQLSGKKLKVQL 414
Score = 33.1 bits (72), Expect = 0.21
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Frame = +2
Query: 11 FAPFGTITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEMNGRIV---GTKPLYVALAQ 178
F+ +GTI +++ + SKG F+ + S E+A A+ +NGR + PL V A
Sbjct: 129 FSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHIMEGANVPLIVKWAD 188
Query: 179 RKEDRKA 199
+++R+A
Sbjct: 189 TEKERQA 195
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 42.7 bits (96), Expect = 3e-04
Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +2
Query: 11 FAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 172
F PFG + SAKV ++ G SK FGF+ + S A A+ MNG + K L V L
Sbjct: 350 FQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTMNGCQLSGKKLKVQL 405
Score = 33.1 bits (72), Expect = 0.21
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Frame = +2
Query: 11 FAPFGTITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEMNGRIV---GTKPLYVALAQ 178
F+ +GTI +++ + SKG F+ + S E+A A+ +NGR + PL V A
Sbjct: 120 FSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHIMEGANVPLIVKWAD 179
Query: 179 RKEDRKA 199
+++R+A
Sbjct: 180 TEKERQA 186
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Frame = +2
Query: 11 FAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGR 139
F+ F +T A+VM GRS+G+GFV F S + A A++ MNG+
Sbjct: 51 FSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQ 95
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMNG 136
++ F+ FG + +K++ E GRS+GFGFV F + A+ EMNG
Sbjct: 23 QRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNG 69
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 175
R F FG + K++++ RSKG+ F+ +++ E A A+ EMNG+I+ + V +A
Sbjct: 299 RAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEMNGKIINGWMIVVDVA 358
Query: 176 QRKEDRK 196
+ K R+
Sbjct: 359 KTKPFRQ 365
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Frame = +2
Query: 11 FAPFGTITSAKVMLED---GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 181
F+ FG I S ++ D G S+GFGF+ + S E + A+ M G+ + + + V+ A +
Sbjct: 132 FSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYK 191
Query: 182 KEDR 193
K+ +
Sbjct: 192 KDTK 195
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Frame = +2
Query: 11 FAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 184
F G + A+V+ + GRS+G+GFVC+SS E A+ ++G + + + V LAQ K
Sbjct: 197 FRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQGK 256
Query: 185 E 187
+
Sbjct: 257 K 257
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 41.9 bits (94), Expect = 5e-04
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 172
R+ F+ +G + A VM + RS+GFGFV +SS EA AV+ M+G+ + + + V L
Sbjct: 20 REAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGMDGKELNGRRVSVKL 78
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 41.9 bits (94), Expect = 5e-04
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +2
Query: 29 ITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 187
+ AKV+ E GRS+GFGF+ F S E A+ MNG V + L + LA +E
Sbjct: 245 VLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLASERE 299
Score = 34.7 bits (76), Expect = 0.070
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +2
Query: 11 FAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 166
F GT+ +++ + RS+GFGFV S EEA +A+ N +G + + V
Sbjct: 136 FGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKV 189
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 41.9 bits (94), Expect = 5e-04
Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Frame = +2
Query: 11 FAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 184
F+ G + A+V+ + GRSKGFGFV + S +E A+ ++G + + + V+ A+ +
Sbjct: 224 FSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEAR 283
Query: 185 EDRKAH 202
R+ +
Sbjct: 284 PPRRQY 289
Score = 36.3 bits (80), Expect = 0.023
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +2
Query: 11 FAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 166
F G + +V+ + GRS+GFGFV SS E A + NG + +PL V
Sbjct: 111 FESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRV 164
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 41.9 bits (94), Expect = 5e-04
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 154
R+ F FG I A ++ + G+SKG+GFV F + AT+AV + N I G K
Sbjct: 34 RRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGRK 86
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 41.9 bits (94), Expect = 5e-04
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 154
R+ F FG I A ++ + G+SKG+GFV F + AT+AV + N I G K
Sbjct: 34 RRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGRK 86
>At3g19350.1 68416.m02455 polyadenylate-binding protein-related /
PABP-related similar to poly(A)-binding protein [Cucumis
sativus] GI:7528270; contains Pfam profile PF00658:
Poly-adenylate binding protein, unique domain
Length = 103
Score = 41.5 bits (93), Expect = 6e-04
Identities = 17/38 (44%), Positives = 27/38 (71%)
Frame = +3
Query: 666 LAAAPLQEQKQMLGERLFPLIQRMHPDLAGKIMGMLLE 779
LA+ P +EQ+ ++GE LF +++ + P A KI GM+LE
Sbjct: 23 LASLPPKEQRDLIGETLFFMVEELEPQFAPKITGMILE 60
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 41.5 bits (93), Expect = 6e-04
Identities = 19/43 (44%), Positives = 30/43 (69%), Gaps = 2/43 (4%)
Frame = +2
Query: 38 AKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 160
A+VM + GRS+GFGFV F + ++A A+ EMNG+ V ++ +
Sbjct: 181 ARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQI 223
Score = 32.7 bits (71), Expect = 0.28
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Frame = +2
Query: 11 FAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ---R 181
FA G I S K++ +D S +GFV + A+ A+ +NGR + +P+ V A +
Sbjct: 83 FASTGPIESCKLIRKDKSS--YGFVHYFDRRCASMAIMTLNGRHIFGQPMKVNWAYATGQ 140
Query: 182 KEDRKAH 202
+ED +H
Sbjct: 141 REDTSSH 147
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 41.5 bits (93), Expect = 6e-04
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 154
R+ F FG I A ++ + G+SKG+GFV F + AT+AV + N I G K
Sbjct: 34 RRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADPNPVIDGRK 86
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 41.1 bits (92), Expect = 8e-04
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 154
R+ F FG I A V+ + GRSKG+GFV F E A +A MN I G +
Sbjct: 39 RRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQNMNPVIDGRR 91
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Frame = +2
Query: 11 FAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 184
FA +G + +K++ E GRS+GFGFV F + A+ MNG+ + + + V AQ +
Sbjct: 28 FAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSR 87
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Frame = +2
Query: 11 FAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 184
FA +G + +K++ E GRS+GFGFV F + A+ MNG+ + + + V AQ +
Sbjct: 28 FAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSR 87
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/48 (37%), Positives = 28/48 (58%)
Frame = +2
Query: 56 DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKA 199
DG+S+ FGF+ F S +EA +A+ N +GT + V +A + D A
Sbjct: 5 DGKSRQFGFIGFRSAQEAQQAIKYFNNTYLGTSLIIVEIAHKVGDENA 52
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Frame = +2
Query: 11 FAPFGTITSAKVM-LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 184
F G + ++ +DG KG+G + F+SPEEA KA+ EMNG+++ + + + LA +
Sbjct: 404 FKEAGEVVDVRLSSFDDGSFKGYGHIEFASPEEAQKAL-EMNGKLLLGRDVRLDLANER 461
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 127
R F FG I A V+ + GRSKG+GFV F PE A KA +
Sbjct: 24 RNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 127
R F FG I A V+ + GRSKG+GFV F PE A KA +
Sbjct: 24 RNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Frame = +2
Query: 11 FAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIV 145
F+ +G + V+++ R KGF +V FSS EEA KA+ E+N ++V
Sbjct: 41 FSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLELNAQLV 87
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 175
R F FG + ++++ R KGF F+ + + EEA KA+ M+G+ + + ++V A
Sbjct: 94 RDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEA 153
Query: 176 QRKED 190
+ + D
Sbjct: 154 KTRSD 158
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 39.5 bits (88), Expect = 0.002
Identities = 26/58 (44%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Frame = +2
Query: 11 FAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMN----GRIVGTKPLYV 166
F FG I AKV+ + RSKGFGFV F E AT+A N GR V K Y+
Sbjct: 29 FERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACENPNHTIDGRTVNCKLAYL 86
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = +2
Query: 11 FAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 175
F+ FG + ++ + GRS+GFGFV F+ +A A M+G+ + +PL ++ A
Sbjct: 61 FSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAMDGKGLLGRPLRISFA 117
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Frame = +2
Query: 11 FAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 184
F+ G + A+V+ E GRS+GFGFV S+ E A+ ++G+ + + + V +A+ +
Sbjct: 227 FSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEER 286
Query: 185 EDR 193
R
Sbjct: 287 TRR 289
Score = 35.9 bits (79), Expect = 0.030
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +2
Query: 11 FAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 184
F GT+ ++V+ + +S+GFGFV S+ EEA KAV + N V + L V A +
Sbjct: 133 FEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPR 192
Query: 185 EDR 193
R
Sbjct: 193 GSR 195
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 38.7 bits (86), Expect = 0.004
Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 6/57 (10%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLED---GRSKGFGFVCFSSPEEATKAVTE---MNGRIVGTK 154
++ F+ FG + A V+L+D GR++GFGFV F+ P A +TE ++GR+V K
Sbjct: 23 KEYFSSFGEVIEA-VILKDRTTGRARGFGFVVFADPAVAEIVITEKHNIDGRLVEAK 78
Score = 35.1 bits (77), Expect = 0.053
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Frame = +2
Query: 11 FAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVT----EMNGRIVGTK 154
F FGT T VM + R +GFGF+ + S E K + E+NG++V K
Sbjct: 128 FEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVK 181
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 38.7 bits (86), Expect = 0.004
Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 6/57 (10%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLED---GRSKGFGFVCFSSPEEATKAVTE---MNGRIVGTK 154
++ F+ FG + A V+L+D GR++GFGFV F+ P A +TE ++GR+V K
Sbjct: 23 KEYFSSFGEVIEA-VILKDRTTGRARGFGFVVFADPAVAEIVITEKHNIDGRLVEAK 78
Score = 35.1 bits (77), Expect = 0.053
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Frame = +2
Query: 11 FAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVT----EMNGRIVGTK 154
F FGT T VM + R +GFGF+ + S E K + E+NG++V K
Sbjct: 128 FEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVK 181
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 154
R+ F +G I A V+ + GRSKG+GFV F PE A +A + I G +
Sbjct: 41 RQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACADPTPIIDGRR 93
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 154
R+ F +G I A V+ + GRSKG+GFV F PE A +A + I G +
Sbjct: 41 RRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVDPTPIIDGRR 93
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 38.3 bits (85), Expect = 0.006
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = +2
Query: 11 FAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 175
F+ FG I AKV+ + G SKG+GFV ++ + A AV MNG + L V +A
Sbjct: 500 FSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAVRIA 556
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 38.3 bits (85), Expect = 0.006
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = +2
Query: 11 FAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 175
F+ FG I AKV+ + G SKG+GFV ++ + A AV MNG + L V +A
Sbjct: 500 FSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAVRIA 556
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 38.3 bits (85), Expect = 0.006
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 175
R+ F +G ++ A VM + GR +GFGFV FS P + + E + + T+ + V A
Sbjct: 23 REHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQEKHS--IDTREVDVKRA 80
Query: 176 QRKEDRK 196
+E+++
Sbjct: 81 MSREEQQ 87
Score = 31.1 bits (67), Expect = 0.86
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 175
R+ F +G +T +M + R +GFGFV F S E+A +V + K + V A
Sbjct: 127 RQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDS-EDAVDSVLHKTFHDLSGKQVEVKRA 185
Query: 176 QRKE 187
K+
Sbjct: 186 LPKD 189
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 38.3 bits (85), Expect = 0.006
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +2
Query: 11 FAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGR 139
F FG + +K+++ E GRSKGF FV F + A+ MNG+
Sbjct: 64 FNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDRMNGQ 108
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 37.9 bits (84), Expect = 0.007
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVT----EMNGRIVGTK 154
+K FA FG IT VM + R +GFGF+ + S E K + E+NG++V K
Sbjct: 50 KKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVK 106
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 37.9 bits (84), Expect = 0.007
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVT----EMNGRIVGTK 154
+K FA FG IT VM + R +GFGF+ + S E K + E+NG++V K
Sbjct: 123 KKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVK 179
Score = 35.5 bits (78), Expect = 0.040
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVT---EMNGRIVGTK 154
R F FG + A +M + GR++GFGFV F+ P A + V ++G+IV K
Sbjct: 23 RDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLKHIIDGKIVEAK 78
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 37.9 bits (84), Expect = 0.007
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVT----EMNGRIVGTK 154
+K FA FG IT VM + R +GFGF+ + S E K + E+NG++V K
Sbjct: 123 KKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVK 179
Score = 35.5 bits (78), Expect = 0.040
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVT---EMNGRIVGTK 154
R F FG + A +M + GR++GFGFV F+ P A + V ++G+IV K
Sbjct: 23 RDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLKHIIDGKIVEAK 78
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 37.9 bits (84), Expect = 0.007
Identities = 17/56 (30%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLEDG-RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 166
R+ F+ +G++ + K++ + R K +GFV FS+ A A+ +M+G+ +G + + V
Sbjct: 24 RRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIEDMDGKSIGGRAVRV 79
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 37.9 bits (84), Expect = 0.007
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +2
Query: 11 FAPFGTITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 145
F+ G + SAKV G SK GFGFV FSS E+ A+ +N ++
Sbjct: 197 FSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLL 243
Score = 34.7 bits (76), Expect = 0.070
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +2
Query: 23 GTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 181
G + +VM + GRS+ FGF S E+A V ++NG V + + V + ++
Sbjct: 100 GAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEK 154
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 37.1 bits (82), Expect = 0.013
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 154
+K F FG I A V+ + GRSKG+GFV F E A A + I G +
Sbjct: 30 KKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRR 82
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 37.1 bits (82), Expect = 0.013
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 154
+K F FG I A V+ + GRSKG+GFV F E A A + I G +
Sbjct: 30 KKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRR 82
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 37.1 bits (82), Expect = 0.013
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 154
+K F FG I A V+ + GRSKG+GFV F E A A + I G +
Sbjct: 30 KKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRR 82
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 36.7 bits (81), Expect = 0.017
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = +2
Query: 11 FAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 178
FA +G + + + G S+GF FV + +EA KAV ++GR+V + + V A+
Sbjct: 36 FAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQFAK 93
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 36.7 bits (81), Expect = 0.017
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = +2
Query: 11 FAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 178
FA +G + + + G S+GF FV + +EA KAV ++GR+V + + V A+
Sbjct: 36 FAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQFAK 93
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 36.7 bits (81), Expect = 0.017
Identities = 16/46 (34%), Positives = 29/46 (63%)
Frame = +2
Query: 59 GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 196
G +GFGFV + E+A +A+ MN +++G + + + A+ E+RK
Sbjct: 85 GEPRGFGFVKYRYAEDAAEAMKRMNHKVIGGREIAIVFAE--ENRK 128
>At4g28300.2 68417.m04053 hydroxyproline-rich glycoprotein family
protein
Length = 438
Score = 36.7 bits (81), Expect = 0.017
Identities = 24/65 (36%), Positives = 28/65 (43%)
Frame = +1
Query: 256 QIFQPSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPT 435
Q+ P S F P PPAP + AQ W QP RP Q++ Y PT
Sbjct: 204 QLQAPPAQSQFMPP--PPAPSHPSSAQTQSFPQYQQNWPPQPQARP--QSSGGY----PT 255
Query: 436 YRPAP 450
Y PAP
Sbjct: 256 YSPAP 260
>At4g28300.1 68417.m04052 hydroxyproline-rich glycoprotein family
protein
Length = 496
Score = 36.7 bits (81), Expect = 0.017
Identities = 24/65 (36%), Positives = 28/65 (43%)
Frame = +1
Query: 256 QIFQPSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPT 435
Q+ P S F P PPAP + AQ W QP RP Q++ Y PT
Sbjct: 262 QLQAPPAQSQFMPP--PPAPSHPSSAQTQSFPQYQQNWPPQPQARP--QSSGGY----PT 313
Query: 436 YRPAP 450
Y PAP
Sbjct: 314 YSPAP 318
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 36.7 bits (81), Expect = 0.017
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +2
Query: 53 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 184
E G KGF FV F+ ++A A+ + NG + G +P+ V A K
Sbjct: 367 ETGLPKGFAFVKFTCKKDAANAIKKFNGHMFGKRPIAVDWAVPK 410
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 36.3 bits (80), Expect = 0.023
Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +2
Query: 23 GTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 178
G + S ++M+ +G+ G+GFV F+S +E KA+ NG + +++ +A+
Sbjct: 268 GEVVSIRLMVNHEGKHVGYGFVEFASADETKKALENKNGEYLHDHKIFIDVAK 320
Score = 32.3 bits (70), Expect = 0.37
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +2
Query: 11 FAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 184
F G + ++++ G+ G GFV F+S EA +A+ + NG + +++ +A +K
Sbjct: 147 FKKVGEVVRVQLIVNLKGKLVGCGFVEFASVNEAEEALQKKNGECLDNNKIFLDVANKK 205
Score = 31.5 bits (68), Expect = 0.65
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +2
Query: 59 GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 178
G G GFV F+S EA KA+ +MNG + ++ +++ + +
Sbjct: 526 GEHVGCGFVEFASVNEAQKALQKMNGENLRSREIFLDVVE 565
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 36.3 bits (80), Expect = 0.023
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = +2
Query: 20 FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 193
FG + VM + GRS+GFG+V F+S E+A A+ +G + L V +A KE+
Sbjct: 26 FGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL--KGEHFLGNRILEVKVATPKEEM 83
Query: 194 K 196
+
Sbjct: 84 R 84
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 35.9 bits (79), Expect = 0.030
Identities = 19/47 (40%), Positives = 31/47 (65%)
Frame = +2
Query: 53 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 193
+DG +GFG V F+S EEA KA+ E +GR + + + + +AQ + +R
Sbjct: 333 DDGSFRGFGHVEFASSEEAQKAL-EFHGRPLLGREIRLDIAQERGER 378
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 35.9 bits (79), Expect = 0.030
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +2
Query: 11 FAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 166
F PFGT+ S +V + G S+G G+V S A A+ ++G VG + + V
Sbjct: 128 FQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRV 181
Score = 34.3 bits (75), Expect = 0.092
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 136
R F+ FGTI S +V+ + GR++ F F+ F+S EE A++ NG
Sbjct: 229 RNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALS-FNG 274
>At4g38080.1 68417.m05378 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; Common family member: At2g22510
[Arabidopsis thaliana]
Length = 128
Score = 35.5 bits (78), Expect = 0.040
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +1
Query: 298 SLPPAPRYYGPAQMT--QIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPR 453
++PP P P Q T Q +PT P+ PP+ PSTQ S +QPT P+
Sbjct: 52 TMPPVPSLPTPGQQTLPQPQPTLPQPTGLPPM-PSTQIPSLPNQVQPTIPNIPQ 104
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +3
Query: 543 PPLVSQSSRPANYKYTPNMRNPPAPQPAV-HIQGQEPLTSTMLAAAPLQEQ 692
PPL + P TP + P PQP + G P+ ST + + P Q Q
Sbjct: 46 PPLPKTTMPPVPSLPTPGQQTLPQPQPTLPQPTGLPPMPSTQIPSLPNQVQ 96
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 35.5 bits (78), Expect = 0.040
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 175
RK F FG + + + G +GFGFV F P +A A M+G ++ + L V A
Sbjct: 53 RKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFA 112
Query: 176 QRKEDRK 196
+ E+RK
Sbjct: 113 E--ENRK 117
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 35.1 bits (77), Expect = 0.053
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Frame = +2
Query: 11 FAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEAT----KAVTEMNGRIVGTK 154
F FGTI VM + R +GFGF+ F S E K E+NG++V K
Sbjct: 142 FDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVK 195
Score = 34.7 bits (76), Expect = 0.070
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Frame = +2
Query: 11 FAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE---MNGRIVGTK 154
F +G + A +M + GR++GFGF+ F+ P A + + + ++GR V K
Sbjct: 35 FGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMDKHIIDGRTVEAK 87
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 35.1 bits (77), Expect = 0.053
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 175
R+ F FG + + + G +GFGF+ F P +A +A +M+G ++ + L V A
Sbjct: 54 RRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFA 113
Query: 176 QRKEDRK 196
+ E+RK
Sbjct: 114 E--ENRK 118
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 35.1 bits (77), Expect = 0.053
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Frame = +2
Query: 5 KEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE---MNGRIVGTK 154
K F +G IT + +M + G+ +GFGF+ F+ P K + + +NG+ V K
Sbjct: 37 KHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIEDTHVINGKQVEIK 91
Score = 31.9 bits (69), Expect = 0.49
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +2
Query: 11 FAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMN 133
FA +G + +V+ E RS+GFGFV F S E + +++ N
Sbjct: 129 FAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGN 171
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 35.1 bits (77), Expect = 0.053
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Frame = +2
Query: 5 KEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE---MNGRIVGTK 154
K F +G IT + +M + G+ +GFGF+ F+ P K + + +NG+ V K
Sbjct: 37 KHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIEDTHVINGKQVEIK 91
Score = 31.9 bits (69), Expect = 0.49
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +2
Query: 11 FAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMN 133
FA +G + +V+ E RS+GFGFV F S E + +++ N
Sbjct: 129 FAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGN 171
>At2g27380.1 68415.m03302 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 761
Score = 35.1 bits (77), Expect = 0.053
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Frame = +1
Query: 295 PSLPPAPRYYGPAQMTQI-RPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQST 471
P PP P Y P Q + +P TP ++ PPV+P P +P P P T
Sbjct: 474 PVKPPTPTYSPPVQPPPVQKPPTPTYS--PPVKPPPIQKPPTPTYSPPIKPPPVKPPTPT 531
Query: 472 IRTSLGARPI 501
+ P+
Sbjct: 532 YSPPIKPPPV 541
Score = 33.5 bits (73), Expect = 0.16
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Frame = +1
Query: 304 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAP-RAPAQSTIRT 480
PP P Y P + ++P TP ++ PPV+P P +P P + P T
Sbjct: 461 PPTPTYSPPIKPPPVKPPTPTYS--PPVQPPPVQKPPTPTYSPPVKPPPIQKPPTPTYSP 518
Query: 481 SLGARPI 501
+ P+
Sbjct: 519 PIKPPPV 525
Score = 32.7 bits (71), Expect = 0.28
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 304 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAP 450
PP P Y P ++ ++P TP ++ PPV+P P +P P
Sbjct: 411 PPTPTYSPPIKLPPVKPPTPIYS--PPVKPPPVHKPPTPIYSPPVKPPP 457
Score = 32.7 bits (71), Expect = 0.28
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +1
Query: 304 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAP 450
PP P Y P + ++P TP ++ PP++P P +P P
Sbjct: 511 PPTPTYSPPIKPPPVKPPTPTYS--PPIKPPPVHKPPTPTYSPPIKPPP 557
Score = 31.5 bits (68), Expect = 0.65
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Frame = +1
Query: 295 PSLPPAPRYYGPAQMTQI-RPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQST 471
P PP P Y P + + +P TP ++ PPV+P P +P P P T
Sbjct: 424 PVKPPTPIYSPPVKPPPVHKPPTPIYS--PPVKPPPVHKPPTPTYSPPIKPPPVKPPTPT 481
Query: 472 IRTSLGARPI 501
+ P+
Sbjct: 482 YSPPVQPPPV 491
Score = 31.1 bits (67), Expect = 0.86
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +1
Query: 304 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAP 450
PP P Y P + ++P TP ++ PPV+P P +P P
Sbjct: 327 PPTPTYSPPIKPPPVKPPTPIYS--PPVKPPPVHKPPTPIYSPPVKPPP 373
Score = 31.1 bits (67), Expect = 0.86
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +1
Query: 301 LPPAPRYYGPAQMTQIR-PTTPRWNAQPPVRPSTQAASAYANMQPTYRPAP 450
LPP P Y P + ++ P TP ++ PPV+P P +P P
Sbjct: 679 LPPTPTYSPPVKPPPVQVPPTPTYS--PPVKPPPVQVPPTPTYSPPIKPPP 727
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Frame = +1
Query: 304 PPAPRYYGPAQMTQIR-PTTPRWNAQPPVRPSTQAASAYANMQPTYRPAP-RAPAQSTIR 477
PP P Y P + ++ P TP ++ PPV+P P +P P + P T
Sbjct: 663 PPTPTYSPPVKPPPVQLPPTPTYS--PPVKPPPVQVPPTPTYSPPVKPPPVQVPPTPTYS 720
Query: 478 TSLGARPI 501
+ P+
Sbjct: 721 PPIKPPPV 728
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Frame = +1
Query: 304 PPAPRYYGPAQMTQI-RPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAP-RAPAQSTIR 477
PP P Y P + + +P TP ++ PPV+P P +P P + P T
Sbjct: 646 PPTPTYSPPIKPPPVQKPPTPTYS--PPVKPPPVQLPPTPTYSPPVKPPPVQVPPTPTYS 703
Query: 478 TSLGARPI 501
+ P+
Sbjct: 704 PPVKPPPV 711
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +1
Query: 304 PPAPRYYGPAQMTQI-RPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRT 480
PP P Y P + + +P TP ++ PP++P + P Y P + P T T
Sbjct: 225 PPTPTYSPPVKPPPVHKPPTPIYS--PPIKPPP----VHKPPTPIYSPPVKPPPVQTPPT 278
Query: 481 SLGARPI 501
+ + P+
Sbjct: 279 PIYSPPV 285
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +1
Query: 295 PSLPPAPRYYGPAQMTQI-RPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAP 459
P PP P Y P + + +P TP ++ PP++P + PTY P + P
Sbjct: 524 PVKPPTPTYSPPIKPPPVHKPPTPTYS--PPIKPPP----IHKPPTPTYSPPIKPP 573
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +1
Query: 304 PPAPRYYGPAQMTQIR-PTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRT 480
PP P Y P + ++ P TP ++ PPV+P + PTY P ++P T
Sbjct: 259 PPTPIYSPPVKPPPVQTPPTPIYS--PPVKPPP----VHKPPTPTYSPPVKSPPVQKPPT 312
Query: 481 SLGARPI 501
+ PI
Sbjct: 313 PTYSPPI 319
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +1
Query: 304 PPAPRYYGPAQMTQI-RPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAP 459
PP P Y P + I +P TP ++ PP++P + PTY P + P
Sbjct: 544 PPTPTYSPPIKPPPIHKPPTPTYS--PPIKPPP----VHKPPTPTYSPPIKPP 590
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +1
Query: 304 PPAPRYYGPAQMTQIR-PTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAP 459
PP P Y P + ++ P TP ++ PP++P + PTY P + P
Sbjct: 141 PPTPSYSPPVKPPPVQMPPTPTYS--PPIKPPP----VHKPPTPTYSPPIKPP 187
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = +1
Query: 304 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAP 450
PP P Y P + +P TP ++ PP++P P +P P
Sbjct: 175 PPTPTYSPPIKPPVHKPPTPIYS--PPIKPPPVHKPPTPIYSPPIKPPP 221
Score = 27.9 bits (59), Expect = 8.0
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +1
Query: 304 PPAPRYYGPAQMTQI-RPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRT 480
PP P Y P + + +P TP ++ PP++P + PTY P + P T
Sbjct: 191 PPTPIYSPPIKPPPVHKPPTPIYS--PPIKPPP----VHKPPTPTYSPPVKPPPVHKPPT 244
Query: 481 SLGARPI 501
+ + PI
Sbjct: 245 PIYSPPI 251
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +1
Query: 304 PPAPRYYGPAQMTQI-RPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAP 459
PP P Y P + + +P TP ++ PP++P + PTY P + P
Sbjct: 561 PPTPTYSPPIKPPPVHKPPTPTYS--PPIKPPP----VHKPPTPTYSPPIKPP 607
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +1
Query: 304 PPAPRYYGPAQMTQI-RPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAP 459
PP P Y P + + +P TP ++ PP++P + PTY P + P
Sbjct: 578 PPTPTYSPPIKPPPVHKPPTPTYS--PPIKPPP----VHKPPTPTYSPPIKPP 624
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +1
Query: 304 PPAPRYYGPAQMTQI-RPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAP 459
PP P Y P + + +P TP ++ PP++P + PTY P + P
Sbjct: 595 PPTPTYSPPIKPPPVHKPPTPTYS--PPIKPPP----VHKPPTPTYSPPIKPP 641
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +1
Query: 304 PPAPRYYGPAQMTQI-RPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAP 459
PP P Y P + + +P TP ++ PP++P + PTY P + P
Sbjct: 612 PPTPTYSPPIKPPPVHKPPTPTYS--PPIKPPP----VHKPPTPTYSPPIKPP 658
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 35.1 bits (77), Expect = 0.053
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +2
Query: 11 FAPFGTITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNG 136
F PFG I K L+ K FGFV F E+A+ A+ M+G
Sbjct: 33 FIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNMDG 76
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 34.7 bits (76), Expect = 0.070
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSP 100
R+ F+ FG + VM E GR +GFGFV FS P
Sbjct: 23 REYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDP 57
Score = 31.1 bits (67), Expect = 0.86
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEAT----KAVTEMNGRIVGTK 154
R F +G ++ A +M++ R +GFGFV F S + K ++NG+ V K
Sbjct: 127 RAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEVK 183
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 34.7 bits (76), Expect = 0.070
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRI 142
RK F FG++ +V ++ G KGFGFV F+ E+A A+ +NG++
Sbjct: 302 RKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNAL-NLNGQL 348
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 34.3 bits (75), Expect = 0.092
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +2
Query: 11 FAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMN 133
F+ FGT+ +V + G+SK FGF+ F PE A A MN
Sbjct: 80 FSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAMN 122
>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 669
Score = 34.3 bits (75), Expect = 0.092
Identities = 20/61 (32%), Positives = 28/61 (45%)
Frame = +1
Query: 304 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRTS 483
PP+PR P ++ RPTTP+ P P + + A + YRP P P Q T
Sbjct: 275 PPSPRS-DPPRLDAPRPTTPK-----PPSPRSVSPRAVQRREIVYRPEPTLPVQHASATK 328
Query: 484 L 486
+
Sbjct: 329 I 329
Score = 30.3 bits (65), Expect = 1.5
Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Frame = +1
Query: 268 PSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPR---WNAQPP----VRPST-QAASAYAN 423
P GAS + S PP+PR P T RP +PR A PP RP+T + S A+
Sbjct: 203 PRGASPQAISSKPPSPRAEPPTLDTP-RPPSPRAASLRADPPRLDAARPTTPRPPSPLAD 261
Query: 424 MQPTYRPAPRAPAQSTIRT 480
P P P + R+
Sbjct: 262 APRLDAPRPTTPKPPSPRS 280
>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 668
Score = 34.3 bits (75), Expect = 0.092
Identities = 20/61 (32%), Positives = 28/61 (45%)
Frame = +1
Query: 304 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRTS 483
PP+PR P ++ RPTTP+ P P + + A + YRP P P Q T
Sbjct: 274 PPSPRS-DPPRLDAPRPTTPK-----PPSPRSVSPRAVQRREIVYRPEPTLPVQHASATK 327
Query: 484 L 486
+
Sbjct: 328 I 328
Score = 30.3 bits (65), Expect = 1.5
Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Frame = +1
Query: 268 PSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPR---WNAQPP----VRPST-QAASAYAN 423
P GAS + S PP+PR P T RP +PR A PP RP+T + S A+
Sbjct: 202 PRGASPQAISSKPPSPRAEPPTLDTP-RPPSPRAASLRADPPRLDAARPTTPRPPSPLAD 260
Query: 424 MQPTYRPAPRAPAQSTIRT 480
P P P + R+
Sbjct: 261 APRLDAPRPTTPKPPSPRS 279
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 33.9 bits (74), Expect = 0.12
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Frame = +2
Query: 11 FAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEAT----KAVTEMNGRIVGTK 154
F FGTI VM + R +GFGF+ F S + K E+NG++V K
Sbjct: 130 FDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVK 183
Score = 33.1 bits (72), Expect = 0.21
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE---MNGRIVGTK 154
R F+ +G + A +M + GR++GFGF+ F+ P + + + + ++GR V K
Sbjct: 23 RDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDKHIIDGRTVEAK 78
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 33.9 bits (74), Expect = 0.12
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Frame = +2
Query: 11 FAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEAT----KAVTEMNGRIVGTK 154
F FGTI VM + R +GFGF+ F S + K E+NG++V K
Sbjct: 130 FDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVK 183
Score = 33.1 bits (72), Expect = 0.21
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE---MNGRIVGTK 154
R F+ +G + A +M + GR++GFGF+ F+ P + + + + ++GR V K
Sbjct: 23 RDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDKHIIDGRTVEAK 78
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 33.9 bits (74), Expect = 0.12
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Frame = +2
Query: 11 FAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEAT----KAVTEMNGRIVGTK 154
F FGTI VM + R +GFGF+ F S + K E+NG++V K
Sbjct: 130 FDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVK 183
Score = 33.1 bits (72), Expect = 0.21
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE---MNGRIVGTK 154
R F+ +G + A +M + GR++GFGF+ F+ P + + + + ++GR V K
Sbjct: 23 RDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDKHIIDGRTVEAK 78
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 33.9 bits (74), Expect = 0.12
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = +2
Query: 11 FAPFGTITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEMNGRIV---GTKPLYVALAQ 178
F FG + +M ++ R S+G GFV +SS E A A+ +NG +PL V A+
Sbjct: 231 FLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAE 290
Query: 179 RKEDR 193
K +
Sbjct: 291 PKRPK 295
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 33.9 bits (74), Expect = 0.12
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = +2
Query: 11 FAPFGTITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEMNGRIV---GTKPLYVALAQ 178
F FG + +M ++ R S+G GFV +SS E A A+ +NG +PL V A+
Sbjct: 231 FLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAE 290
Query: 179 RKEDR 193
K +
Sbjct: 291 PKRPK 295
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 33.9 bits (74), Expect = 0.12
Identities = 20/62 (32%), Positives = 29/62 (46%)
Frame = +2
Query: 11 FAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 190
F G +T G + FGFV ++ A KAV + V +PL V LA+ + +
Sbjct: 312 FQRHGEVTKIVTPPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAE 371
Query: 191 RK 196
RK
Sbjct: 372 RK 373
Score = 32.7 bits (71), Expect = 0.28
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +2
Query: 53 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 184
+ G SKG+ FV F + + A KA+ E++ + K + +L++ K
Sbjct: 152 DSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLSETK 195
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 33.9 bits (74), Expect = 0.12
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVG 148
R F+ +G + A V+L+ G+SKG+GFV F + A A+ E + +I G
Sbjct: 92 RSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEPSKKIDG 142
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 33.9 bits (74), Expect = 0.12
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVG 148
R F+ +G + A V+L+ G+SKG+GFV F + A A+ E + +I G
Sbjct: 92 RSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEPSKKIDG 142
>At3g10070.1 68416.m01207 transcription initiation factor IID
(TFIID) subunit A family protein similar to hypothetical
protein GB:CAB10099 [Schizosaccharomyces pombe];
contains Pfam profile PF03847: Transcription initiation
factor TFIID subunit A
Length = 539
Score = 33.5 bits (73), Expect = 0.16
Identities = 22/63 (34%), Positives = 29/63 (46%)
Frame = +1
Query: 295 PSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTI 474
P PP P P+ +TQI+P TP N P S+ S+ A P+ P P P +
Sbjct: 14 PETPPQPSDSKPSTLTQIQP-TPSTNPSPSSVVSS-IPSSPAPQSPSLNPNPNPPQYTRP 71
Query: 475 RTS 483
TS
Sbjct: 72 VTS 74
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 33.5 bits (73), Expect = 0.16
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Frame = +2
Query: 11 FAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKA-----VTEMNGRIVGTKPLYVA 169
F+ FG + +K++ + G+S+ FGFV F + T A V E + V + V
Sbjct: 27 FSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIMIMDVEESRSKCVNVGSITVE 86
Query: 170 LA-QRKEDRKA 199
+A QR+++R A
Sbjct: 87 VARQRRKNRSA 97
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 33.1 bits (72), Expect = 0.21
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +2
Query: 11 FAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIV 145
F +G I V+++ G++KGFGFV F + + A +A+ E RI+
Sbjct: 124 FEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRIL 170
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 33.1 bits (72), Expect = 0.21
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +2
Query: 11 FAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIV 145
F +G I V+++ G++KGFGFV F + + A +A+ E RI+
Sbjct: 124 FEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRIL 170
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 33.1 bits (72), Expect = 0.21
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +2
Query: 11 FAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 184
F +G I ++M + GRS+GFGFV F + + + ++ +G K + + A+ K
Sbjct: 177 FCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPK 236
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +2
Query: 11 FAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 127
F FG + + +M + G +GFGFV F+ A K + E
Sbjct: 86 FGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE 126
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 32.7 bits (71), Expect = 0.28
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRI 142
R+ F FG + ++ L E G+ KGFGF+ F E + A +NG++
Sbjct: 282 RQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALNGKL 330
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 32.7 bits (71), Expect = 0.28
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 121
R+ F FG + A V+ E GRSKG+GF+ F +A+
Sbjct: 29 RRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRAL 70
>At3g04610.1 68416.m00493 KH domain-containing protein similar
putative nucleic acid binding protein GB:CAB39665
[Arabidopsis thaliana]; Pfam HMM hit: KH domain family
of RNA binding proteins
Length = 577
Score = 32.7 bits (71), Expect = 0.28
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = +3
Query: 543 PPLVSQSSRPANYKYTPNMRNPP---APQPAVHIQGQEPLTSTMLAAAPLQEQKQMLGER 713
PP + R +Y P MR PP P + G+EP + +++AP +Q+ +
Sbjct: 403 PPYMQPPPRHDSYYPPPEMRQPPMEKQPHQGISAYGREPPMNVHVSSAPPMVAQQVTQQM 462
Query: 714 LFPL 725
PL
Sbjct: 463 QIPL 466
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 32.7 bits (71), Expect = 0.28
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +2
Query: 11 FAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRI 142
F +G IT V+++ GR+KGFGFV F + + A A+ R+
Sbjct: 183 FEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNPEKRM 228
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 32.7 bits (71), Expect = 0.28
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 175
++ F+ +G + A V E G+ +GFGFV F++ + KA+ + + I+G KP+ V A
Sbjct: 23 KQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRDTH-FILG-KPVDVRKA 80
Query: 176 QRKED 190
RK +
Sbjct: 81 IRKHE 85
Score = 30.3 bits (65), Expect = 1.5
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +2
Query: 11 FAPFGTITSAKVMLEDG---RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 181
F FG T VM DG R +GFGFV + S E++ + V + N + K + V A
Sbjct: 140 FERFGRTTDVVVM-HDGVTNRPRGFGFVTYDS-EDSVEVVMQSNFHELSDKRVEVKRAIP 197
Query: 182 KE 187
KE
Sbjct: 198 KE 199
>At1g20620.2 68414.m02577 catalase 3 (SEN2) almost identical to
catalase 3 SP:Q42547, GI:3123188 from [Arabidopsis
thaliana]; identical to catalase 3 (SEN2) mRNA, partial
cds GI:3158369
Length = 427
Score = 32.7 bits (71), Expect = 0.28
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 363 WSCRSYLSHLSWSIVTWCW 307
W Y+SHL S++TWCW
Sbjct: 170 WRILDYMSHLPESLLTWCW 188
>At1g20620.1 68414.m02578 catalase 3 (SEN2) almost identical to
catalase 3 SP:Q42547, GI:3123188 from [Arabidopsis
thaliana]; identical to catalase 3 (SEN2) mRNA, partial
cds GI:3158369
Length = 492
Score = 32.7 bits (71), Expect = 0.28
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 363 WSCRSYLSHLSWSIVTWCW 307
W Y+SHL S++TWCW
Sbjct: 170 WRILDYMSHLPESLLTWCW 188
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 32.3 bits (70), Expect = 0.37
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +2
Query: 2 RKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 175
R F+ G I K+ + DG+S+ F ++ F + +EA A+T +N + T + V +A
Sbjct: 20 RDVFSRKGEIADVKLKRKSDGKSRQFAYIGFRTEQEAQDAITYVNKCFIDTYRISVEVA 78
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 31.9 bits (69), Expect = 0.49
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +2
Query: 11 FAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 175
F +G I K +++ G+SKG+GF+ F S A A+ + +I GT+ LA
Sbjct: 148 FKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQPQKKI-GTRMTACQLA 203
>At1g30480.1 68414.m03726 DNA-damage-repair/toleration protein,
chloroplast (DRT111) nearly identical to SP|P42698
DNA-damage-repair/toleration protein DRT111, chloroplast
precursor {Arabidopsis thaliana}; contains Pfam profiles
PF01585: G-patch domain, PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 387
Score = 31.9 bits (69), Expect = 0.49
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +2
Query: 80 FVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 205
FV FS PEE TKA+ +++GR G + + ++ K L
Sbjct: 336 FVQFSRPEETTKALVDLDGRYFGGRTVRATFYDEEKFSKNEL 377
>At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 442
Score = 31.9 bits (69), Expect = 0.49
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +2
Query: 47 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 166
++++GR +G F+ F S E A +A+ +NG + KP+ +
Sbjct: 390 LMQEGRMRGQAFLTFPSVEVAHRALNLVNGFVFKGKPMII 429
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 31.9 bits (69), Expect = 0.49
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +2
Query: 11 FAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 184
FA G +T ++L+ S+GFGF+ S +A + + ++ ++ + + V A+R+
Sbjct: 95 FAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEKARRR 154
Query: 185 EDR 193
R
Sbjct: 155 RGR 157
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 31.5 bits (68), Expect = 0.65
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Frame = +2
Query: 5 KEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAV----TEMNGRIVGTK 154
++F P + K E ++ GFGF+ +++ + A KAV E +GRI+ K
Sbjct: 186 RQFGPIENVILIKGHHEVEKNAGFGFIIYAAEKSAMKAVEFDGVEFHGRILTVK 239
>At3g08670.1 68416.m01007 expressed protein
Length = 567
Score = 31.5 bits (68), Expect = 0.65
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +1
Query: 346 IRPTTPRWNAQPPVRPSTQAASAYANMQPT---YRPAPRAPAQSTIRTSLGARPIT 504
IRP++P + RPST ++ A+ T RP + + R SL +RP T
Sbjct: 191 IRPSSPSSRSSSSARPSTPTRTSSASRSSTPSRIRPGSSSSSMDKARPSLSSRPST 246
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 31.1 bits (67), Expect = 0.86
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +2
Query: 5 KEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVG 148
K F +G IT + +M + G+ +GFGFV ++ K + + N I+G
Sbjct: 60 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQD-NHIIIG 108
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +2
Query: 11 FAPFGTITSAKVMLED--GRSKGFGFVCFSSPE 103
F FG + ++M + GRS+GFGFV + S +
Sbjct: 150 FMQFGELKEHQIMRDHSTGRSRGFGFVTYESED 182
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 31.1 bits (67), Expect = 0.86
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Frame = +2
Query: 11 FAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNG--RIVG-TKPLYVALAQ 178
F+ +GTI +++ SKG F+ + + E+A A+ +NG ++ G T PL V A
Sbjct: 126 FSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTVPLVVKWAD 185
Query: 179 RKEDR 193
+ +R
Sbjct: 186 TERER 190
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 31.1 bits (67), Expect = 0.86
Identities = 17/64 (26%), Positives = 32/64 (50%)
Frame = +2
Query: 5 KEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 184
K F P+G +T+ ++ + F FV F + E+ATKA+ + + + V A +
Sbjct: 112 KHFEPYGKVTNVRIR------RNFSFVQFETQEDATKALEATQRSKILDRVVSVEYALKD 165
Query: 185 EDRK 196
+D +
Sbjct: 166 DDER 169
>At3g48830.1 68416.m05333 polynucleotide adenylyltransferase family
protein / RNA recognition motif (RRM)-containing protein
similar to SP|P13685 Poly(A) polymerase (EC 2.7.7.19)
{Escherichia coli O157:H7}; contains Pfam profiles
PF01743: polyA polymerase family protein, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 881
Score = 31.1 bits (67), Expect = 0.86
Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +2
Query: 11 FAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 178
F G + S ++++ + + G+GFV F+SP A A+ + NG + +++ +A+
Sbjct: 702 FNDVGEVVSVRLIVSPESKHVGYGFVEFASPCLANMALEKKNGEYLHDHKIFLGVAK 758
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 31.1 bits (67), Expect = 0.86
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +2
Query: 11 FAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIV 145
F+ +G I ++ + G +SKGF F+ + AV +NG +V
Sbjct: 56 FSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNLNGALV 102
>At1g45100.1 68414.m05170 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis
sativus] GI:7528270; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 497
Score = 31.1 bits (67), Expect = 0.86
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +2
Query: 11 FAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRI 142
F+ G I +++++ G G GFV F+S EA KA+ + G+I
Sbjct: 396 FSDVGEIVHIRIIVDHMGEPVGCGFVEFNSSNEAEKALQKKTGKI 440
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +2
Query: 44 VMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 136
V+ +G+ G+GFV F+S A KA+ E NG
Sbjct: 190 VVNHEGKHVGYGFVEFASAYGANKALEEKNG 220
>At1g23540.1 68414.m02960 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 720
Score = 31.1 bits (67), Expect = 0.86
Identities = 18/55 (32%), Positives = 22/55 (40%)
Frame = +1
Query: 304 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQS 468
PPAP P P P PP++PS A S AN P P P ++
Sbjct: 155 PPAPPASDPTNSPPASPLDP--TNPPPIQPSGPATSPPANPNAPPSPFPTVPPKT 207
>At5g19810.1 68418.m02354 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 249
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/45 (35%), Positives = 19/45 (42%)
Frame = +1
Query: 298 SLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQP 432
S PP P + P T RP P + P P QAA+ Y P
Sbjct: 151 SPPPPPVLFSPPPPTVTRPPPPPTITRSPPPPRPQAAAYYKKTPP 195
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Frame = +1
Query: 295 PSLPPAPRYYGPAQMTQ-IRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQST 471
PS+ P+P P+ + PTTP PP P+T PT +P S
Sbjct: 452 PSIVPSPPSTTPSPGSPPTSPTTPTPGGSPPSSPTTPTPGGSPPSSPTTPTPGGSPPSSP 511
Query: 472 IRTSLGARP 498
S G P
Sbjct: 512 TTPSPGGSP 520
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Frame = +1
Query: 292 VPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPS---TQAASAYANMQPTYRPAPRAPA 462
VPS P P G I P+ P PP PS + + + P+ P+P +P
Sbjct: 410 VPSPPTTPSPGGSPPSPSISPSPPITVPSPPTTPSPGGSPPSPSIVPSPPSTTPSPGSPP 469
Query: 463 QSTIRTSLGARP 498
S + G P
Sbjct: 470 TSPTTPTPGGSP 481
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/64 (26%), Positives = 23/64 (35%)
Frame = +1
Query: 295 PSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTI 474
PS P P G I P+ P PP P++ + + P P P ST
Sbjct: 508 PSSPTTPSPGGSPPSPSISPSPPITVPSPPSTPTSPGSPPSPSSPTPSSPIPSPPTPSTP 567
Query: 475 RTSL 486
T +
Sbjct: 568 PTPI 571
Score = 27.9 bits (59), Expect = 8.0
Identities = 20/62 (32%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Frame = +1
Query: 268 PSGASGFFVPSLPP-APRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRP 444
PS S P PP +P P PTTP PP P+T PT P
Sbjct: 456 PSPPSTTPSPGSPPTSPTTPTPGGSPPSSPTTPTPGGSPPSSPTTPTPGGSPPSSPT-TP 514
Query: 445 AP 450
+P
Sbjct: 515 SP 516
>At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3)
family protein low similarity to Translation initiation
factor IF-3 from [subsp. Schizaphis graminum] {Buchnera
aphidicola} SP|P46243, {Salmonella typhimurium}
SP|P33321; contains Pfam profiles PF05198: Translation
initiation factor IF-3 N-terminal domain, PF00707:
Translation initiation factor IF-3 C-terminal domain
Length = 520
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = +1
Query: 304 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQ 465
P PR+ A Q T R++ Q P +P + + N QPT R P+ P+Q
Sbjct: 346 PQRPRFSNQAPNQQ---PTGRFDPQSPNQPPSAPRPQFPNQQPTGRFDPQFPSQ 396
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +1
Query: 265 QPSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRP 444
QP+G PS PP P++ A Q +T R+N Q P + + S + + P +P
Sbjct: 384 QPTGRFDPQFPSQPPRPQFPNQAPNQQ---STGRFNPQFPNQRPSPPQSRFPDQAPNQQP 440
Query: 445 APRAP 459
+ +P
Sbjct: 441 SGPSP 445
Score = 27.9 bits (59), Expect = 8.0
Identities = 24/71 (33%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Frame = +1
Query: 265 QPSGASGFFVPSLP-PAPRYYGPAQMTQ----IRPTTPRWNAQPPVRPSTQAASAYANMQ 429
QPSG S P P PR+ A Q P P PP RP T+ + +N Q
Sbjct: 439 QPSGPSPNRHPDRQGPPPRFQNQAPNQQPTGRFEPQPPNPPRAPP-RPQTRLPNETSNEQ 497
Query: 430 PTYRPAPRAPA 462
PT PA
Sbjct: 498 PTAPGRSSGPA 508
>At5g40560.1 68418.m04922 DegP protease, putative contains
similarity to DegP2 protease GI:13172275 from
[Arabidopsis thaliana]
Length = 410
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -1
Query: 764 HYFPSQIRVHSLNKWKQSFPKHLFLFLEWCCCKHSR 657
+Y ++V+S+NK K KHL +E CC K R
Sbjct: 324 YYMYKHLKVNSVNKVKVENLKHLCELIEKCCTKDLR 359
>At4g14220.1 68417.m02194 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 371
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +3
Query: 306 SSTTLLWTSSNDSNKTYNSKVECTAPCKA*HTSSICICKYATHLQTSTESS 458
SS++ L +S+D N T ++ C P S++ CK+ HLQ E S
Sbjct: 27 SSSSALVVASDDDNNTDDACSICLEPFTLQDPSTVTSCKHEYHLQCIIEWS 77
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +2
Query: 11 FAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 181
F +G I K + + G+SKG+GF+ + S A A+ + +I G++ LA +
Sbjct: 160 FKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKI-GSRMTACQLASK 217
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +2
Query: 11 FAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 181
F +G I K + + G+SKG+GF+ + S A A+ + +I G++ LA +
Sbjct: 160 FKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKI-GSRMTACQLASK 217
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +2
Query: 11 FAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 181
F +G I K + + G+SKG+GF+ + S A A+ + +I G++ LA +
Sbjct: 160 FKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKI-GSRMTACQLASK 217
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +2
Query: 11 FAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 154
F +G I A ++ + RSKG+GFV F + AT+A + I G +
Sbjct: 37 FIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACEDSTPIINGRR 86
>At3g04670.1 68416.m00500 WRKY family transcription factor similar
to elicitor response element binding protein WRKY3
isolog GB:AAB63078 [Arabidopsis thaliana]
Length = 330
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 743 RVHSLNKWKQSFPKHLFLFLEWCC 672
+ S NK++ SFP+H+FL CC
Sbjct: 58 KFRSTNKFRSSFPQHIFLESPICC 81
>At1g76930.2 68414.m08956 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 256
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/63 (23%), Positives = 26/63 (41%)
Frame = +1
Query: 262 FQPSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYR 441
F + +F S PP ++Y P + + P + + PPV S + + P Y+
Sbjct: 17 FVSQTTANYFYSSPPPPVKHYSPPPVYKSPPPPVKHYSPPPVYKSPPPPVKHYSPPPVYK 76
Query: 442 PAP 450
P
Sbjct: 77 SPP 79
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +1
Query: 298 SLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAP 450
S PP ++Y P + + P + + PPV S Y + P Y+ P
Sbjct: 45 SPPPPVKHYSPPPVYKSPPPPVKHYSPPPVYKSPPPPVKYYSPPPVYKSPP 95
>At1g76930.1 68414.m08955 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 293
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/63 (23%), Positives = 26/63 (41%)
Frame = +1
Query: 262 FQPSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYR 441
F + +F S PP ++Y P + + P + + PPV S + + P Y+
Sbjct: 17 FVSQTTANYFYSSPPPPVKHYSPPPVYKSPPPPVKHYSPPPVYKSPPPPVKHYSPPPVYK 76
Query: 442 PAP 450
P
Sbjct: 77 SPP 79
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +1
Query: 298 SLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAP 450
S PP ++Y P + + P + + PPV S Y + P Y+ P
Sbjct: 45 SPPPPVKHYSPPPVYKSPPPPVKHYSPPPVYKSPPPPVKYYSPPPVYKSPP 95
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +2
Query: 11 FAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 136
F FG I + + L+ G KG+ + + EEA A++ MNG
Sbjct: 115 FGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAMNG 158
>At1g68720.1 68414.m07851 cytidine/deoxycytidylate deaminase family
protein contains Pfam profile PF00383: Cytidine and
deoxycytidylate deaminase zinc-binding region
Length = 1307
Score = 25.8 bits (54), Expect(2) = 1.7
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +2
Query: 515 SCCCCCIYSSTFSISK 562
SCCCCC S+ S K
Sbjct: 51 SCCCCCSTPSSSSFVK 66
Score = 22.6 bits (46), Expect(2) = 1.7
Identities = 6/10 (60%), Positives = 8/10 (80%)
Frame = +2
Query: 503 LDARSCCCCC 532
+ +RS CCCC
Sbjct: 46 VSSRSSCCCC 55
>At5g58160.1 68418.m07280 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|Q05858 Formin (Limb deformity protein) {Gallus
gallus}; contains Pfam profile PF02181: Formin Homology
2(FH2) Domain
Length = 1307
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/70 (30%), Positives = 26/70 (37%)
Frame = +1
Query: 274 GASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPR 453
GAS +L R P + +P PR PP P S + P PAP
Sbjct: 658 GASDNVASNLGQPARSPPPISNSDKKPALPR--PPPPPPPPPMQHSTVTKVPPPPPPAPP 715
Query: 454 APAQSTIRTS 483
AP + TS
Sbjct: 716 APPTPIVHTS 725
>At5g13260.1 68418.m01523 expressed protein
Length = 537
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 522 AAAASIRPPLVSQSSRPANY-KYTPNMRNPPAPQPAVHIQGQEPL 653
A++A + PP +S+SS PAN + PP P + Q PL
Sbjct: 117 ASSAVVPPPKISRSSSPANSPAVSVRASQPPVPPSKLRNQTTNPL 161
>At5g04970.1 68418.m00526 pectinesterase, putative contains
similarity to pectinesterase from Vitis vinifera
GI:15081598, Prunus persica SP|Q43062; contains Pfam
profile PF01095 pectinesterase
Length = 624
Score = 29.9 bits (64), Expect = 2.0
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +1
Query: 295 PSLPPA-PRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQST 471
P+ PP+ P + P Q + PT QPP +P TQ + + PT P P P+QS
Sbjct: 24 PTRPPSQPPSHPPIQPSSQPPT------QPPSQPPTQPPTQPPSHPPTQPPTP-PPSQSP 76
Query: 472 IRTS 483
+ S
Sbjct: 77 SQPS 80
>At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
Lycopersicon esculentum, proline-rich cell wall protein
[Medicago sativa] GI:3818416; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 334
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +1
Query: 295 PSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQ-PTYRPAPRAP 459
P PP P P + ++P TP+ P V+P + + + + PT +P P+ P
Sbjct: 43 PVKPPKPPAVKPPKPPAVKPPTPK---PPTVKPHPKPPTVKPHPKPPTVKPHPKPP 95
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +2
Query: 11 FAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRI 142
F +G I V+++ GR KG+GFV F + + A +A+ R+
Sbjct: 428 FESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKRPEKRM 473
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 29.9 bits (64), Expect = 2.0
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = +1
Query: 295 PSLPPAPRYYGPAQM-TQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQST 471
P +PP P Y PAQ+ + + PT PP RP Q + AN Q P +
Sbjct: 50 PLVPPGPPYAPPAQIPSSLLPT--NLPPPPPFRPGMQ-FTPVANFQNPSSGVPPPGSMPQ 106
Query: 472 IRTSLGARP 498
+ G RP
Sbjct: 107 YQPQPGMRP 115
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/52 (28%), Positives = 19/52 (36%)
Frame = +1
Query: 295 PSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAP 450
P PP P Y P P P ++ PP P Y+ P+ P P
Sbjct: 440 PPPPPPPPVYSPPPPPPPPPPPPVYSPPPPPPPPPPPPPVYSPPPPSPPPPP 491
>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 826
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +1
Query: 304 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQP 432
PP+P YY P + P+TP PP P+ Y + P
Sbjct: 735 PPSPVYYPPVTQSPPPPSTP-VEYHPPASPNQSPPPEYQSPPP 776
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +2
Query: 53 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 175
E G SKG+ F + P A +NG +G K L V A
Sbjct: 411 ETGNSKGYAFCVYQDPSVTDIACAALNGIKMGDKTLTVRRA 451
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 29.5 bits (63), Expect = 2.6
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Frame = +1
Query: 259 IFQPSGASGFFVPSLP---PAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQ 429
+F P S + P P P P Y P T P T N QPP+ T + + +
Sbjct: 606 VFSPPPPSPVYSPPPPSHSPPPPVYSPPPPTFSPPPTHNTN-QPPMGAPTPTQAPTPSSE 664
Query: 430 PTYRPAPRAPA-QSTIRTSLGA 492
T P P + + QS I + + A
Sbjct: 665 TTQVPTPSSESDQSQILSPVQA 686
>At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
hydroxyproline-rich glycoprotein DZ-HRGP from Volvox
carteri f. nagariensis GP|6523547; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 375
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/60 (31%), Positives = 24/60 (40%)
Frame = +1
Query: 304 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRTS 483
PP P P T +P P N QPP P + + A P P P P S +T+
Sbjct: 46 PPQPDPQPPTPPT-FQPAPPA-NDQPPPPPQSTSPPPVATTPPALPPKPLPPPLSPPQTT 103
>At4g16280.1 68417.m02469 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 505
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +2
Query: 62 RSKGFGFVCFSSPEEATKAVTEMNGRIV---GTKPLYVALAQRKEDR 193
+S+G GFV +SS E A A+ +NG +PL V A+ K +
Sbjct: 7 QSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPK 53
>At3g07100.1 68416.m00845 protein transport protein Sec24, putative
similar to protein transport protein Sec24A
(SEC24-related protein) [Homo sapiens] SWISS-PROT:O95486
Length = 1038
Score = 29.1 bits (62), Expect = 3.5
Identities = 28/84 (33%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Frame = +1
Query: 262 FQPSGASGFFVPSLPPA--PRYYGP---AQMTQIRPTTPRWNAQPPVRPSTQAASAYANM 426
F AS F + PP P+ GP ++ RP TP +A P RP T + A
Sbjct: 11 FPARPASSPFASAPPPGIPPQSGGPPTGSEAVGFRPFTP--SASQPTRPFTASGPPPAPP 68
Query: 427 QPTYRPAPRAPAQSTIRTSLGARP 498
T RP +P S I G+RP
Sbjct: 69 VGTMRPGQPSPFVSQIP---GSRP 89
>At1g23720.1 68414.m02994 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 895
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Frame = +1
Query: 289 FVPSLPPAPRYYGPAQMTQIRPTTPRW---NAQPPVRPSTQAASAYANMQPTY-RPAPRA 456
+V S PP P YY P+ + + P + + PP S Y + P Y +P
Sbjct: 815 YVYSSPPPPTYYSPSPKVEYKSPPPPYVYNSPPPPAYYSPSPKIEYKSPPPPYVYSSPPP 874
Query: 457 PAQS 468
P+ S
Sbjct: 875 PSYS 878
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = +1
Query: 289 FVPSLPPAPRYYGPAQMTQIRPTTPR--WNAQPPVRPSTQAASAYANMQPTY 438
+V S PP P YY P+ + + P +++ PP S Y + P Y
Sbjct: 738 YVYSSPPPPPYYSPSPKVEYKSPPPPYVYSSPPPPYYSPSPKVEYKSPPPPY 789
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Frame = +1
Query: 289 FVPSLPPAPRYYGPAQMTQIRPTTPRW---NAQPPVRPSTQAASAYANMQPTY-RPAPRA 456
+V S PP P YY P+ + + P + + PP S Y + P Y +P
Sbjct: 789 YVYSSPPPPPYYSPSPKVEYKSPPPPYVYSSPPPPTYYSPSPKVEYKSPPPPYVYNSPPP 848
Query: 457 PA 462
PA
Sbjct: 849 PA 850
>At5g14420.4 68418.m01687 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +1
Query: 247 ANGQIFQPSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQA 405
A+ Q + GA + + PP P Y P + TQ P P ++ QP PS A
Sbjct: 31 ASQQSYPQYGAESY---NYPPPPSYAQPPEYTQ--PPPPLYSTQPYSAPSYSA 78
>At5g14420.3 68418.m01686 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +1
Query: 247 ANGQIFQPSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQA 405
A+ Q + GA + + PP P Y P + TQ P P ++ QP PS A
Sbjct: 31 ASQQSYPQYGAESY---NYPPPPSYAQPPEYTQ--PPPPLYSTQPYSAPSYSA 78
>At5g14420.2 68418.m01685 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +1
Query: 247 ANGQIFQPSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQA 405
A+ Q + GA + + PP P Y P + TQ P P ++ QP PS A
Sbjct: 31 ASQQSYPQYGAESY---NYPPPPSYAQPPEYTQ--PPPPLYSTQPYSAPSYSA 78
>At5g14420.1 68418.m01684 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +1
Query: 247 ANGQIFQPSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQA 405
A+ Q + GA + + PP P Y P + TQ P P ++ QP PS A
Sbjct: 31 ASQQSYPQYGAESY---NYPPPPSYAQPPEYTQ--PPPPLYSTQPYSAPSYSA 78
>At4g34150.1 68417.m04846 C2 domain-containing protein similar to
calcium-dependent protein kinase [Dunaliella
tertiolecta] GI:6644464; contains Pfam profile PF00168:
C2 domain
Length = 247
Score = 28.7 bits (61), Expect = 4.6
Identities = 26/70 (37%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Frame = +1
Query: 265 QPSG---ASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPT 435
QPSG ASG+ PP P Y P T P P +A PP PS+ QP+
Sbjct: 180 QPSGYPPASGY-----PPQPSAYPPPS-TSGYPPIP--SAYPPPPPSSAYPPQPYPPQPS 231
Query: 436 YRPAPRAPAQ 465
Y P P Q
Sbjct: 232 YYPQGPYPGQ 241
>At1g72760.1 68414.m08413 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 697
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +3
Query: 498 HNWTQGVAAAAASIRPPLVSQSSRPANYKYTPNMRNPPAPQPAVHIQGQE 647
+N T + + +ASI P+ +Q+++P + + PN PQ I E
Sbjct: 176 YNSTNSIDSDSASISSPVSTQTNKPNSNFFQPNSPRISTPQSMSEISQSE 225
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 80 FVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 178
FV F +A KA+ MNG+++ KP+ + ++
Sbjct: 223 FVEFFDVRDAAKALRVMNGKVISGKPMVIQFSR 255
>At1g26150.1 68414.m03192 protein kinase family protein similar to
Pto kinase interactor 1 GI:3668069 from [Lycopersicon
esculentum]
Length = 760
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 543 PPLVSQSSRPANYKYTPNMRNPPAPQPAVHIQGQEPLTS 659
PPL +++ PAN +P + P P P P+TS
Sbjct: 102 PPLPTEAPPPANPVSSPPPESSPPPPPPTEAPPTTPITS 140
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Frame = +1
Query: 301 LPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQP--TYRPAPRAPAQSTI 474
+PP PR+ P+ RP+TP +++ P P P + RP P P+ S
Sbjct: 191 IPPPPRHL-PSPPASERPSTPPSDSEHPSPPPPGHPKRREQPPPPGSKRPTPSPPSPSDS 249
Query: 475 RTSLGARP 498
+ + P
Sbjct: 250 KRPVHPSP 257
>At1g10620.1 68414.m01204 protein kinase family protein contains
serine/threonine protein kinases active-site signature,
PROSITE:PS00108
Length = 718
Score = 28.7 bits (61), Expect = 4.6
Identities = 21/62 (33%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Frame = +1
Query: 295 PSLPPAPRYYG---PAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQ 465
P PP+P PA Q P P PP PS+ S P P P+ P Q
Sbjct: 48 PPSPPSPDTQTSPPPATAAQPPPNQPPNTTPPPTPPSSPPPSI---TPPPSPPQPQPPPQ 104
Query: 466 ST 471
ST
Sbjct: 105 ST 106
>At5g66840.1 68418.m08427 SAP domain-containing protein contains
Pfam domain PF02037: SAP domain
Length = 551
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +1
Query: 328 PAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAP 459
PA RP PR +A P P A +YA + ++ P P P
Sbjct: 334 PANFYTSRPHAPRSHAPPTYAPRPHAPRSYAPIN-SHLPRPNIP 376
>At5g14920.1 68418.m01750 gibberellin-regulated family protein
similar to SP|P46689 Gibberellin-regulated protein 1
precursor {Arabidopsis thaliana}; contains Pfam profile
PF02704: Gibberellin regulated protein
Length = 275
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/52 (32%), Positives = 20/52 (38%)
Frame = +1
Query: 304 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAP 459
PP P P PTTP + PPV+P T PT P + P
Sbjct: 126 PPTPTVKPPTTSPVKPPTTPPVQS-PPVQPPTYKPPTSPVKPPTTTPPVKPP 176
>At5g13530.1 68418.m01562 protein kinase family protein / ankyrin
repeat family protein contains similarity to
ankyrin-related gene UNC-44 gi|790608|gb|AAA85854;
contains Pfam domains PF00023: Ankyrin repeat and
PF00069: Protein kinase domain
Length = 834
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +2
Query: 602 QPTSSTTSSAYPRTRTSDLYYACSSTTPG-TETDAWGTTVSTYSENAP*FGWENNGYAFG 778
+PT T + ++ + LY C + +P T +AWG + E+A E++ ++FG
Sbjct: 296 KPTCQKTRPEFDSSKVT-LYTDCVTLSPHYTAPEAWGPVKKLFWEDASGVSPESDAWSFG 354
>At5g07820.1 68418.m00896 expressed protein
Length = 561
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +1
Query: 292 VPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPR 453
+PSLPP + IR TT R P + + +A+ N +P + P+
Sbjct: 354 LPSLPPPSEVVTGSDPRPIRQTTSRSKTSLPEKKQSGSANLVTNPKPESKIRPK 407
>At4g31210.1 68417.m04432 DNA topoisomerase family protein similar
to DNA Topoisomerase I (SP:Q9X3X7) {Zymomonas mobilis}
Length = 1280
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 594 NMRNPPAPQPAVHIQGQEPLTSTMLAAAPLQEQKQMLG 707
N+ P + P+ + Q+ TST + AP QEQ ++G
Sbjct: 253 NVEGPKSSTPSNSMSEQQHWTSTKASNAPKQEQDNIVG 290
>At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
Lycopersicon esculentum, proline-rich cell wall protein
[Medicago sativa] GI:3818416; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 428
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/66 (30%), Positives = 25/66 (37%)
Frame = +1
Query: 295 PSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTI 474
P PP P Y P T ++P P PP P+ +A P Y P P+
Sbjct: 127 PYTPPPPTPYTPPPPT-VKPPPPPVVTPPPPTPTPEAPCPPPPPTP-YPPPPKPETCPID 184
Query: 475 RTSLGA 492
LGA
Sbjct: 185 ALKLGA 190
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +2
Query: 65 SKGFGFVCFSSPEEATKAVTEMN 133
S+GF FV F S E+ATKA+ N
Sbjct: 498 SRGFAFVHFYSVEDATKALEATN 520
>At2g21235.1 68415.m02522 bZIP protein-related similar to
VirE2-interacting protein VIP1 [Arabidopsis thaliana]
GI:7258340, tbZIP transcription factor [Arabidopsis
thaliana] GI:17065884
Length = 550
Score = 28.3 bits (60), Expect = 6.0
Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Frame = +1
Query: 301 LPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAP-AQSTIR 477
LPPAP Y + P + PP PS A + +P P PR P +S
Sbjct: 226 LPPAPVY----------SSNPMVRSSPPGHPSPSAHLEEMSNRPPLHPQPRVPVTRSNSA 275
Query: 478 TSLGARP 498
G+RP
Sbjct: 276 KVSGSRP 282
>At1g11130.1 68414.m01274 leucine-rich repeat family protein /
protein kinase family protein contains leucine
rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to leucine-rich
repeat transmembrane protein kinase 2 [Zea mays]
gi|3360291|gb|AAC27895
Length = 768
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Frame = +1
Query: 304 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASA-YANMQPTYRPAPRAP 459
PP P P T P PR PPV A A +A +QP P P P
Sbjct: 249 PPPPPVVDPPPATHRAPPVPR---IPPVSGVPPAPFAPFAPLQPQQHPPPSPP 298
>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to chromatin
remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
GI:6478518; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00628: PHD-finger, PF00385: 'chromo'
(CHRromatin Organization MOdifier)
Length = 2228
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -1
Query: 683 EWCCCKHSRGQRFLSLDMHCWLWSWWVAHVW 591
EW R + LSL WLWSW H+W
Sbjct: 1293 EWDRLLRMRLEFPLSLSSASWLWSW--QHIW 1321
>At5g06640.1 68418.m00750 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 689
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Frame = +1
Query: 304 PPAPRYYGPAQMTQIR-PTTPR-WNAQPPVRPSTQAASAYANMQPTY 438
PP P YY P+ + P P +N+ PP S Y + P Y
Sbjct: 86 PPPPSYYSPSPKVNYKSPPPPNVYNSPPPPYYSPSPKVDYKSPPPPY 132
>At5g04130.2 68418.m00400 DNA topoisomerase, ATP-hydrolyzing,
putative / DNA topoisomerase II, putative / DNA gyrase,
putative similar to SP|O50627 DNA gyrase subunit B (EC
5.99.1.3) {Bacillus halodurans}; contains Pfam profiles
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein, PF00204: DNA topoisomerase II
(N-terminal region), PF00986: DNA gyrase, B subunit,
carboxyl terminus, PF01751: Toprim domain
Length = 519
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +3
Query: 540 RPPLVSQSSRPANYKYTPNMRNPPAPQPAVHIQGQEPLTSTM 665
RP L S S PA ++++ + +PP P+ + + LTS +
Sbjct: 21 RPRLFSSSLSPALHRHSSTLSSPPFSSPSPSFRLKFQLTSVL 62
>At5g04130.1 68418.m00399 DNA topoisomerase, ATP-hydrolyzing,
putative / DNA topoisomerase II, putative / DNA gyrase,
putative similar to SP|O50627 DNA gyrase subunit B (EC
5.99.1.3) {Bacillus halodurans}; contains Pfam profiles
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein, PF00204: DNA topoisomerase II
(N-terminal region), PF00986: DNA gyrase, B subunit,
carboxyl terminus, PF01751: Toprim domain
Length = 732
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +3
Query: 540 RPPLVSQSSRPANYKYTPNMRNPPAPQPAVHIQGQEPLTSTM 665
RP L S S PA ++++ + +PP P+ + + LTS +
Sbjct: 21 RPRLFSSSLSPALHRHSSTLSSPPFSSPSPSFRLKFQLTSVL 62
>At4g13390.1 68417.m02092 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 429
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Frame = +1
Query: 289 FVPSLPPAPRYYGPAQMTQIR-PTTPRWNAQPPVRP--STQAASAYANMQPTY 438
+V S PP P YY P+ + P P + PP P S Y + P Y
Sbjct: 206 YVYSFPPPPPYYSPSPKVGYKSPPAPYVYSSPPPPPYYSPSPKVNYKSPPPPY 258
>At3g28930.1 68416.m03613 avrRpt2-induced AIG2 protein (AIG2)
identical to SP|P54121 AIG2 protein (avrRpt2-induced
gene) {Arabidopsis thaliana}
Length = 170
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = +3
Query: 612 APQPAVHIQG--QEP-LTSTMLAAAPLQEQKQMLGERLFPLIQRMHPDLAGKIMGML 773
+P V + G QEP + + +L AP+ Q+ G L+ L R+HP ++ G++
Sbjct: 7 SPSHDVFVYGSFQEPAVVNLILECAPVMVSAQLHGYHLYRLKGRLHPCISPSDNGLI 63
>At3g28550.1 68416.m03565 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 1018
Score = 27.9 bits (59), Expect = 8.0
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = +1
Query: 289 FVPSLPPAPRYYGPAQMTQIRPTTPR--WNAQPPVRPSTQAASAYANMQPT-YRPAPRAP 459
+V S PP P YY PA + P +++ PP S Y + P Y P+P+
Sbjct: 934 YVYSSPPPP-YYSPAPKVDYKSPPPPYVYSSPPPPYYSPSPKVDYKSPPPPYYSPSPKVD 992
Query: 460 AQS 468
+S
Sbjct: 993 YKS 995
>At3g25240.1 68416.m03153 hypothetical protein contains Pfam profile
PF04720: Protein of unknown function (DUF506)
Length = 281
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3
Query: 384 RGLCIPPWSCRSYLSH 337
RGL +PPW SYL H
Sbjct: 222 RGLSLPPWRRSSYLQH 237
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 27.9 bits (59), Expect = 8.0
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Frame = +2
Query: 5 KEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR- 181
+ F P+G + + ++ + F FV F++ E+ATKA+ + + K + V A R
Sbjct: 88 RHFEPYGKVLNVRMR------RNFAFVQFATQEDATKALDSTHNSKLLDKVVSVEYALRE 141
Query: 182 ---KEDRKA 199
+EDR A
Sbjct: 142 AGEREDRYA 150
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 27.9 bits (59), Expect = 8.0
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Frame = +2
Query: 5 KEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR- 181
+ F P+G + + ++ + F FV F++ E+ATKA+ + + K + V A R
Sbjct: 114 RHFEPYGKVLNVRMR------RNFAFVQFATQEDATKALDSTHNSKLLDKVVSVEYALRE 167
Query: 182 ---KEDRKA 199
+EDR A
Sbjct: 168 AGEREDRYA 176
>At2g31090.1 68415.m03797 expressed protein
Length = 75
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -3
Query: 444 WSVSGLHICICRCCLC 397
W V L CIC CCLC
Sbjct: 32 WIVGLLLSCICPCCLC 47
>At2g26130.1 68415.m03135 zinc finger (C3HC4-type RING finger)
family protein contains a zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 398
Score = 27.9 bits (59), Expect = 8.0
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 8/51 (15%)
Frame = -3
Query: 474 YCRLGRSSRCWS---VSGLHICICRCCL-CARPYRGLCIPPW----SCRSY 346
YC R S S +SGL+I + RCC+ C P+ C W SC Y
Sbjct: 245 YCPNPRCSTLMSETELSGLNIGVRRCCVKCGEPFCVKCKVSWHNNLSCDEY 295
>At1g79350.1 68414.m09247 DNA-binding protein, putative contains
Pfam PF00628: PHD-finger domain; contains TIGRFAMS
TIGR01053: zinc finger domain, LSD1 subclass; contains
Pfam PF00271: Helicase conserved C-terminal domain;
similar to WSSV086 (GI:19481678)[shrimp white spot
syndrome virus]; similar to nuclear protein Np95
(GI:17939938) [Mus musculus]
Length = 1299
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/58 (25%), Positives = 23/58 (39%)
Frame = +1
Query: 313 PRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRTSL 486
P+ P +++ RP P+ QPP T ++P P P PA T +
Sbjct: 56 PQMLPPELLSRARPQFPQSPQQPPQPIQTLPPPIQQQLKPLNLPRPPVPAHGIDPTKM 113
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,737,363
Number of Sequences: 28952
Number of extensions: 440937
Number of successful extensions: 2559
Number of sequences better than 10.0: 211
Number of HSP's better than 10.0 without gapping: 1687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2487
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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