Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0291
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    26   5.0  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    26   5.0  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
 Frame = +2

Query: 77  PDVGPALVEAPIVPSP--VHVGPLVPG-QLTPLVHILININDAASATPVESVEPEQSNVE 247
           P V P + EAP VP P    V P VP     P V ++     +    P   V PE  +V 
Sbjct: 592 PPVAPVVPEAPSVPQPPVAPVAPEVPSVPQRPAVPVVPEA-PSVPQPPAAPVVPEVPSVP 650

Query: 248 EK 253
           ++
Sbjct: 651 QR 652


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 86  GPALVEA-PIVPSPVHVGPLVPGQLTPLVHILINI 187
           G AL+   PIV S  H+ P   G+L P +H  +++
Sbjct: 781 GAALLSKFPIVNSTHHLLPSPQGELAPAIHATLDV 815


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,971,142
Number of Sequences: 5004
Number of extensions: 30313
Number of successful extensions: 107
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)