Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0291
         (746 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0306 + 17307166-17309091                                         29   3.0  
05_01_0141 - 937428-937717,938483-938705                               29   3.9  
06_02_0124 + 12116278-12116374,12116595-12116881                       29   5.2  
06_02_0125 + 12122812-12122911,12123647-12123993                       28   6.9  
09_06_0016 - 20240358-20240797,20241040-20241131,20241132-202412...    28   9.1  

>12_02_0306 + 17307166-17309091
          Length = 641

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 377 GLGATMAGSATITGATLGPSATITGLGTMMAGSA 276
           G+G T+ G     GA +G S T  G GT+  G A
Sbjct: 473 GVGVTLVGVGAWAGADVGSSLTEGGGGTLCGGDA 506



 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 377 GLGATMAGSATITGATLGPSATITGLGTMMAGSA 276
           G+G T+ G     GA +G S T  G GT+  G A
Sbjct: 206 GVGVTLVGVGAGAGADVGSSLTGGGDGTLCGGGA 239



 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 377 GLGATMAGSATITGATLGPSATITGLGTMMAGSA 276
           G+G T+ G     GA +G S T  G GT+  G A
Sbjct: 357 GVGVTLVGVGAGAGADVGSSLTGGGDGTLCGGGA 390



 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 377 GLGATMAGSATITGATLGPSATITGLGTMMAGSA 276
           G+G T+ G     GA +G S T  G GT+  G A
Sbjct: 95  GVGVTVTGVGAGAGAGVGSSLTGDGGGTLCGGGA 128



 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 377 GLGATMAGSATITGATLGPSATITGLGTMMAGSA 276
           G+G T+ G     GA +G S T  G GT+  G A
Sbjct: 397 GVGVTVTGVGAGAGAGVGSSLTGDGGGTLCGGGA 430


>05_01_0141 - 937428-937717,938483-938705
          Length = 170

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 441 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGY 331
           GH+G +   H GH G +   H    H GG+   H G+
Sbjct: 114 GHHGGLFGGHHGHHGGLFGGHHGH-HGGGLFGGHHGH 149



 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = -3

Query: 441 GHNGRVSHDHGGHQGHVTNVHWA--RGHNGGVSHDHRGY 331
           GH+G      GGH GH     +    GH+GG+   H G+
Sbjct: 122 GHHGHHGGLFGGHHGHHGGGLFGGHHGHHGGLFGGHHGF 160



 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = -3

Query: 429 RVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRN 259
           ++SH HG H G+        GH+GG+   H G+   L   +   +  G     HG +
Sbjct: 100 KLSHGHG-HGGYGYG-----GHHGGLFGGHHGHHGGLFGGHHGHHGGGLFGGHHGHH 150


>06_02_0124 + 12116278-12116374,12116595-12116881
          Length = 127

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 21/73 (28%), Positives = 27/73 (36%), Gaps = 8/73 (10%)
 Frame = -3

Query: 459 DEHWARG-HNGRVSHDHGGHQGHVTNVHWARGHNGGVSHD-------HRGYTRSLGNNYR 304
           D+ W  G H+G      GG+ G      +  G+ GG  H        H GY    G  Y 
Sbjct: 49  DQKWGGGYHHGGGYGYGGGYGGGYGRPAYGGGYGGGYGHPGYGGGYGHPGYGDGYGGGYG 108

Query: 303 ARYYDGRISNDHG 265
           + Y  G     HG
Sbjct: 109 SGYGGGYGHPGHG 121


>06_02_0125 + 12122812-12122911,12123647-12123993
          Length = 148

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/55 (27%), Positives = 21/55 (38%)
 Frame = -3

Query: 459 DEHWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARY 295
           D+ W   H G   +  G   G   +  +  G+ GG  + H GY    G  Y   Y
Sbjct: 50  DQKWGGAHGGGYGYGGGYGGGGYGHPGYGGGYGGG--YGHPGYGGGYGGGYGQGY 102


>09_06_0016 -
           20240358-20240797,20241040-20241131,20241132-20241250,
           20241398-20241561,20241664-20241757,20242048-20242080,
           20242361-20242478,20242712-20242812,20242882-20242962,
           20243138-20243335,20243411-20243545,20243662-20243667,
           20243727-20243805,20243845-20243896,20244328-20244388,
           20244475-20244532,20245137-20245225,20246305-20246799
          Length = 804

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 444 RGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHD 343
           R H+ R SH H  H+ H T +   R H+    HD
Sbjct: 694 RAHSHRHSHHHDAHKRHKTELAGHRRHHVLHIHD 727


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,016,394
Number of Sequences: 37544
Number of extensions: 237356
Number of successful extensions: 883
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)