Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0291
(746 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25797| Best HMM Match : Extensin_2 (HMM E-Value=0.55) 32 0.43
SB_25379| Best HMM Match : Keratin_B2 (HMM E-Value=2.5) 31 0.99
SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13) 30 2.3
SB_22798| Best HMM Match : Cadherin (HMM E-Value=0) 30 2.3
SB_38992| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_34021| Best HMM Match : Zip (HMM E-Value=0) 29 3.0
SB_13265| Best HMM Match : IncA (HMM E-Value=0.32) 29 4.0
SB_19891| Best HMM Match : Keratin (HMM E-Value=0.96) 29 4.0
SB_40869| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_40325| Best HMM Match : Herpes_US9 (HMM E-Value=1.9) 29 5.3
SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_9681| Best HMM Match : IncA (HMM E-Value=0.58) 28 7.0
SB_54180| Best HMM Match : Mfp-3 (HMM E-Value=1.9) 28 9.2
SB_37199| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
>SB_25797| Best HMM Match : Extensin_2 (HMM E-Value=0.55)
Length = 910
Score = 32.3 bits (70), Expect = 0.43
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -3
Query: 414 HGGHQGHVTNVHWARGHNGGV-SHDHRGYTRSLGNNYR 304
+G HQGH+ N +GH G V +++H TRS G Y+
Sbjct: 777 YGAHQGHMCNGLPEKGHYGDVGAYEHAMDTRSPGYPYK 814
>SB_25379| Best HMM Match : Keratin_B2 (HMM E-Value=2.5)
Length = 442
Score = 31.1 bits (67), Expect = 0.99
Identities = 15/51 (29%), Positives = 30/51 (58%)
Frame = +2
Query: 101 EAPIVPSPVHVGPLVPGQLTPLVHILININDAASATPVESVEPEQSNVEEK 253
+ PI P P + + G L +++++ND +A PVE+V+ +Q++ + K
Sbjct: 348 KGPISPDPA-IMEEIDGLSNTLDDLILSLNDVDTAEPVENVDIDQADADCK 397
>SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)
Length = 492
Score = 29.9 bits (64), Expect = 2.3
Identities = 21/65 (32%), Positives = 27/65 (41%)
Frame = -3
Query: 459 DEHWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRI 280
D+ R H+ R H HGG G+ + GH GG H H G G+ + DG
Sbjct: 118 DDCDGRSHSHR--HAHGGGPGYGGDYGGGLGHCGGPGHGH-GPGHGHGHGAGLVHGDGGP 174
Query: 279 SNDHG 265
HG
Sbjct: 175 GPGHG 179
>SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 3255
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +2
Query: 155 LTPLVHILININDAASATPVESVEPEQSNVEE 250
LT H+LIN+ND PV S QS V+E
Sbjct: 597 LTDTSHLLINVNDINDNPPVFSPSAYQSRVKE 628
>SB_38992| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 139
Score = 29.5 bits (63), Expect = 3.0
Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Frame = -3
Query: 447 ARGHNGRVSHDHGG----HQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRI 280
+R +G DHGG H G + R +GG DH G R G R GR
Sbjct: 2 SRRDHGSTRRDHGGTGRDHGGTRRDHGGTRRDHGGTGRDHGGTGRDHGGTGRDHGGTGR- 60
Query: 279 SNDHG 265
DHG
Sbjct: 61 --DHG 63
Score = 29.1 bits (62), Expect = 4.0
Identities = 23/69 (33%), Positives = 26/69 (37%), Gaps = 4/69 (5%)
Frame = -3
Query: 459 DEHWARGHNGRVSHDHGGHQ---GHVTNVHWARGHN-GGVSHDHRGYTRSLGNNYRARYY 292
D R +G DHGG + G H G + GG DH G R G R
Sbjct: 5 DHGSTRRDHGGTGRDHGGTRRDHGGTRRDHGGTGRDHGGTGRDHGGTGRDHGGTGRDHGG 64
Query: 291 DGRISNDHG 265
GR DHG
Sbjct: 65 TGR---DHG 70
Score = 29.1 bits (62), Expect = 4.0
Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
Frame = -3
Query: 444 RGHNGRVSHDHGG----HQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRIS 277
R H G DHGG H G + R +GG DH G R G R G
Sbjct: 60 RDHGG-TGRDHGGTGRDHGGTRRDHDGTRRDHGGTRRDHGGTRRDHGGTRRDH---GGTR 115
Query: 276 NDHG 265
DHG
Sbjct: 116 RDHG 119
>SB_34021| Best HMM Match : Zip (HMM E-Value=0)
Length = 808
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Frame = -3
Query: 441 GHNGRVSHDHGGHQ----GHVTNVHWARGHNGGVSHDHRGYTR-SLGNNYRARYYDGRIS 277
GH+ SH++ GH GH H N G SH H G++ + G+++ + S
Sbjct: 310 GHSHGHSHENHGHSHENHGHSHENHGHSHENHGHSHKHHGHSHDNHGHSHENHGHSHGHS 369
Query: 276 NDH 268
++H
Sbjct: 370 HEH 372
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = -3
Query: 414 HGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRN 259
HG GH H N G SH++ G++ N+ + + G ++HG +
Sbjct: 309 HGHSHGHSHENHGHSHENHGHSHENHGHSHE--NHGHSHKHHGHSHDNHGHS 358
>SB_13265| Best HMM Match : IncA (HMM E-Value=0.32)
Length = 339
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -1
Query: 377 GLGATMAGSATITGATLGPSATITGLGTMMAGSAMIT-GETAAFLQH 240
G+G +++G + G L A + G+G + AG+ +++ G T+ +H
Sbjct: 202 GVGVSLSGIGVLIGGPLAGVAGLVGVGVVGAGAGVVSRGFTSKVAKH 248
>SB_19891| Best HMM Match : Keratin (HMM E-Value=0.96)
Length = 209
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -1
Query: 377 GLGATMAGSATITGATLGPSATITGLGTMMAGSAMIT-GETAAFLQH 240
G+G +++G + G L A + G+G + AG+ +++ G T+ +H
Sbjct: 94 GVGVSLSGIGVLIGGPLAGVAGLVGVGVVGAGAGIVSRGLTSKVAKH 140
>SB_40869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 412
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -3
Query: 447 ARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNY 307
A GH ++H H H A H G++H H T+ L ++Y
Sbjct: 214 AHGHTKGLAHSHTKGLAHSHTKGLAHSHTKGLAHSH---TKGLAHSY 257
>SB_40325| Best HMM Match : Herpes_US9 (HMM E-Value=1.9)
Length = 227
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -1
Query: 377 GLGATMAGSATITGATLGPSATITGLGTMMAGSAMIT-GETAAFLQH 240
G+G +++G + G L A + G+G + AG+ +++ G T+ +H
Sbjct: 67 GVGVSLSGIRVLIGGPLAGVAGLVGVGVVGAGAGVVSRGLTSKVAKH 113
>SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1141
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -3
Query: 435 NGRVSHDHGG--HQGHVTNVHWARGHNGGVSHDHRGYTR 325
+GR++ GG H+++ RG GGVS H G+ R
Sbjct: 1059 HGRLTRGDGGGASSAHISHGRLTRGDGGGVSSAHIGHGR 1097
>SB_9681| Best HMM Match : IncA (HMM E-Value=0.58)
Length = 215
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -1
Query: 377 GLGATMAGSATITGATLGPSATITGLGTMMAGSAMIT-GETAAFLQH 240
G+G +++G + G L A + G+G + AG+ +++ G T +H
Sbjct: 78 GVGVSLSGIGVLIGGPLAGVAGLVGVGVVGAGAGVVSRGLTTKVSKH 124
>SB_54180| Best HMM Match : Mfp-3 (HMM E-Value=1.9)
Length = 125
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 420 HDHGGHQGHVTNVHWARGHNGGVSHDHRGYT 328
HD+GGH H+ GH+ G+ HD+ G+T
Sbjct: 83 HDYGGHD------HYDGGHHDGMHHDY-GHT 106
>SB_37199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 461
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 435 NGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGY 331
+G SHD G H + + GH+G SHD G+
Sbjct: 5 DGVDSHDDDGDDSHDDDGDDSHGHDGVESHDGYGF 39
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,570,976
Number of Sequences: 59808
Number of extensions: 258059
Number of successful extensions: 992
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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