Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0291
         (746 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g05510.1 68415.m00583 glycine-rich protein                          35   0.066
At2g05440.2 68415.m00575 glycine-rich protein                          31   0.61 
At2g05440.1 68415.m00574 glycine-rich protein                          31   0.61 
At3g63100.1 68416.m07087 glycine-rich protein                          31   1.1  
At1g27090.1 68414.m03302 glycine-rich protein                          30   1.9  
At5g05190.1 68418.m00553 expressed protein similar to unknown pr...    28   5.7  
At3g24480.1 68416.m03070 leucine-rich repeat family protein / ex...    28   5.7  
At3g28840.1 68416.m03598 expressed protein                             27   10.0 
At2g46800.2 68415.m05840 zinc transporter (ZAT) identical to zin...    27   10.0 
At2g46800.1 68415.m05839 zinc transporter (ZAT) identical to zin...    27   10.0 

>At2g05510.1 68415.m00583 glycine-rich protein 
          Length = 127

 Score = 34.7 bits (76), Expect = 0.066
 Identities = 18/44 (40%), Positives = 20/44 (45%)
 Frame = -3

Query: 438 HNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNY 307
           H G   H  GGH G   + H   GHNGG  H   GY    G +Y
Sbjct: 44  HGGHGGHGGGGHYGGGGHGHG--GHNGGGGHGLDGYGGGHGGHY 85



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/49 (36%), Positives = 21/49 (42%)
 Frame = -3

Query: 453 HWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNY 307
           H   GH G   H HGGH G     H   G+ GG    H G+    G +Y
Sbjct: 50  HGGGGHYGGGGHGHGGHNG--GGGHGLDGYGGG----HGGHYGGGGGHY 92


>At2g05440.2 68415.m00575 glycine-rich protein
          Length = 154

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 17/42 (40%), Positives = 18/42 (42%)
 Frame = -3

Query: 456 EHWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGY 331
           E +  GH G   H  GG  GH        GHNGG  H   GY
Sbjct: 41  EGYGGGHGGHGGHGGGGGHGH-------GGHNGGGGHGLDGY 75



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = -3

Query: 441 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSH 346
           GH G   H HGGH G     H   G+ GG  H
Sbjct: 52  GHGGGGGHGHGGHNG--GGGHGLDGYGGGGGH 81


>At2g05440.1 68415.m00574 glycine-rich protein
          Length = 127

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 17/42 (40%), Positives = 18/42 (42%)
 Frame = -3

Query: 456 EHWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGY 331
           E +  GH G   H  GG  GH        GHNGG  H   GY
Sbjct: 41  EGYGGGHGGHGGHGGGGGHGH-------GGHNGGGGHGLDGY 75



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = -3

Query: 441 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSH 346
           GH G   H HGGH G     H   G+ GG  H
Sbjct: 52  GHGGGGGHGHGGHNG--GGGHGLDGYGGGGGH 81


>At3g63100.1 68416.m07087 glycine-rich protein 
          Length = 199

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
 Frame = -3

Query: 444 RGHNGRVSHDHG---GHQGHVTNVHWARG---HNGGVSHDHRGYTRSLGNNY 307
           RGH     H HG   GH+ H  +    R    H G   H HRG+ R  G  +
Sbjct: 90  RGHGHGRGHGHGHGHGHRRHGRDHRHGRDRGHHRGHGHHHHRGHRRGRGRGH 141



 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/48 (35%), Positives = 21/48 (43%)
 Frame = -3

Query: 453 HWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNN 310
           H   G + R   D G H+GH    H  RGH  G    H G+ R  G +
Sbjct: 106 HRRHGRDHRHGRDRGHHRGH--GHHHHRGHRRGRGRGH-GHGRGRGGH 150



 Score = 27.5 bits (58), Expect = 10.0
 Identities = 15/43 (34%), Positives = 16/43 (37%)
 Frame = -3

Query: 453 HWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTR 325
           H    H     H H  H GH       RGH  G  H HR + R
Sbjct: 70  HCDHCHGHGYGHGHREH-GHDRGHGHGRGHGHGHGHGHRRHGR 111


>At1g27090.1 68414.m03302 glycine-rich protein
          Length = 420

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = -3

Query: 444 RGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHD-HRGYTRSLGNNYRARYYDGR 283
           +   GR     GG  G   N    RG  GG  +  +  Y +S GN Y+  YY+ R
Sbjct: 340 QNQRGRRGARRGG--GGYQNGRGGRGGGGGYQNGRYESYDQSGGNGYQRNYYNNR 392


>At5g05190.1 68418.m00553 expressed protein similar to unknown
           protein (emb|CAB88044.1)
          Length = 615

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/66 (27%), Positives = 26/66 (39%)
 Frame = -3

Query: 456 EHWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRIS 277
           E + RG     SHD         ++     + GG++HD   Y        R +    RIS
Sbjct: 354 ESYTRGSPSHPSHDEFDRYPRAHSLQMP-SYAGGMNHDFVDYMYHNNPRARGQGQGSRIS 412

Query: 276 NDHGRN 259
            + GRN
Sbjct: 413 GEMGRN 418


>At3g24480.1 68416.m03070 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 494

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +2

Query: 65  HYESPDVGPALVEAPIVPSPVHVGPLVP 148
           HY SP   P    +P  PSP   GPL P
Sbjct: 452 HYSSPPPPPVHHSSPPPPSPEFEGPLPP 479


>At3g28840.1 68416.m03598 expressed protein 
          Length = 391

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -1

Query: 371 GATMAGSATITGATLGPSATITGLGTMMAGSAMITGETAA 252
           GAT +G+ T  G T    A  T  GT  +G+    G T A
Sbjct: 264 GATASGAGTAAGGTTASDAG-TAAGTTASGAGTAAGGTTA 302


>At2g46800.2 68415.m05840 zinc transporter (ZAT) identical to zinc
           transporter ZAT [Arabidopsis thaliana]
           gi|4206640|gb|AAD11757; member of the cation diffusion
           facilitator (CDF) family, or cation efflux (CE) family,
           PMID:11500563
          Length = 398

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 15/42 (35%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
 Frame = -3

Query: 459 DEHWARGHNGRVSHDHGGHQGHVTNV--HWARGHNGGVSHDH 340
           D   + GH     HDH  H   VT    H    H  G SH H
Sbjct: 183 DHGHSHGHGHGHGHDHHNHSHGVTVTTHHHHHDHEHGHSHGH 224


>At2g46800.1 68415.m05839 zinc transporter (ZAT) identical to zinc
           transporter ZAT [Arabidopsis thaliana]
           gi|4206640|gb|AAD11757; member of the cation diffusion
           facilitator (CDF) family, or cation efflux (CE) family,
           PMID:11500563
          Length = 398

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 15/42 (35%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
 Frame = -3

Query: 459 DEHWARGHNGRVSHDHGGHQGHVTNV--HWARGHNGGVSHDH 340
           D   + GH     HDH  H   VT    H    H  G SH H
Sbjct: 183 DHGHSHGHGHGHGHDHHNHSHGVTVTTHHHHHDHEHGHSHGH 224


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,742,612
Number of Sequences: 28952
Number of extensions: 172428
Number of successful extensions: 640
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)