Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0290
         (553 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    27   0.14 
DQ855489-1|ABH88176.1|  122|Tribolium castaneum chemosensory pro...    22   4.1  
AJ973444-1|CAJ01491.1|  122|Tribolium castaneum hypothetical pro...    22   4.1  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    22   4.1  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   5.4  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   5.4  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   5.4  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   5.4  

>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 26.6 bits (56), Expect = 0.14
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +3

Query: 42  RCFRCYRSCGCRQPHQAHFRTRNHRFPSSRRWC 140
           +C  C+R   C+   Q H+RT     P   + C
Sbjct: 136 QCVICHRVLSCKSALQMHYRTHTGERPFKCKIC 168


>DQ855489-1|ABH88176.1|  122|Tribolium castaneum chemosensory
           protein 2 protein.
          Length = 122

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 489 LHLNKFYHSYLVELLREGDC 430
           LH  + + +YL  LL++G C
Sbjct: 34  LHNKRLFDNYLQCLLKKGKC 53


>AJ973444-1|CAJ01491.1|  122|Tribolium castaneum hypothetical
           protein protein.
          Length = 122

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 489 LHLNKFYHSYLVELLREGDC 430
           LH  + + +YL  LL++G C
Sbjct: 34  LHNKRLFDNYLQCLLKKGKC 53


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 284 SPMKSNPTPLLSP 322
           SP    PTP++SP
Sbjct: 311 SPYSGTPTPMMSP 323


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 235  VHVHNDLNERSGLAWCDWSNDNGGGHD 155
            V +   L +  G+   D+ ND+G G D
Sbjct: 1384 VEIVKQLQKLQGIDDGDYENDSGSGPD 1410


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 235  VHVHNDLNERSGLAWCDWSNDNGGGHD 155
            V +   L +  G+   D+ ND+G G D
Sbjct: 1384 VEIVKQLQKLQGIDDGDYENDSGSGPD 1410


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 235  VHVHNDLNERSGLAWCDWSNDNGGGHD 155
            V +   L +  G+   D+ ND+G G D
Sbjct: 1384 VEIVKQLQKLQGIDDGDYENDSGSGPD 1410


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 235  VHVHNDLNERSGLAWCDWSNDNGGGHD 155
            V +   L +  G+   D+ ND+G G D
Sbjct: 1384 VEIVKQLQKLQGIDDGDYENDSGSGPD 1410


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,776
Number of Sequences: 336
Number of extensions: 2011
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13621010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)