Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0290
         (553 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G6.08 |erv1||sulfhydryl oxidase |Schizosaccharomyces pombe|...    27   1.4  
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces...    26   4.2  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    25   5.6  
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa...    25   7.4  

>SPAC3G6.08 |erv1||sulfhydryl oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 253 SISSWLVHVHNDLNERSG 200
           S+  W+   HND+NER G
Sbjct: 147 SLCEWICEAHNDVNERLG 164


>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 995

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 224 VNVNQPGADAVSFRSPSLLTSPMKSNPTPLL 316
           +NV   G + +  + PSL T   K NP  LL
Sbjct: 853 INVAIRGGNIIPMQKPSLTTHETKQNPYDLL 883


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 166 PRYRWTSRTRPAHSSRSDHCEREPARS 246
           PR  + SR+   HSS   H  R P RS
Sbjct: 122 PRSDYGSRSPSPHSSVDSHQSRSPVRS 148


>SPBC215.15 |sec13||COPII-coated vesicle component
           Sec13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 221 IVNVNQPGADAVSFRSPSLLTSPMKSNPTPLLSPKRLKKA 340
           I   ++PG +AV +  PSL  S +    +P   PK+L  A
Sbjct: 140 IFTAHEPGCNAVCWSPPSLSGSVV--GQSPAAGPKKLATA 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,893,876
Number of Sequences: 5004
Number of extensions: 33218
Number of successful extensions: 96
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)