Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0290
         (553 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0049 - 373980-374148,374407-374451,375003-375149,375647-37...    28   4.3  
05_01_0029 + 187769-188707,188971-189246,189978-190174,190263-19...    28   5.7  

>01_01_0049 -
           373980-374148,374407-374451,375003-375149,375647-375768,
           375938-376042,376123-376234,376314-376381,376617-376766,
           377471-377533,377616-377741,377841-377963,378206-378387,
           379398-379488
          Length = 500

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 96  FRTRNHRFPSSRRWCCH*SQSCPPP 170
           F+TR+ R  S RR CC   Q  PPP
Sbjct: 35  FQTRDRRAVSLRRTCCS-MQQAPPP 58


>05_01_0029 + 187769-188707,188971-189246,189978-190174,190263-190404,
            190584-190862,190941-191013,191331-191379,192169-192433,
            192576-192631,192777-192845,193028-193139,193682-193771,
            193955-194125,194449-194506,194970-195128,195379-195401
          Length = 985

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = +3

Query: 3    AREQTKVF---KNEILRCFRCYRSCG-CRQPHQAHFRTRNHRFP 122
            AR  TK+F    ++ + C+RCYR+ G    PH  +FR   +  P
Sbjct: 887  ARLGTKLFVMYPDDSVVCYRCYRNQGDSASPHGRNFRKGGNNNP 930


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,028,799
Number of Sequences: 37544
Number of extensions: 251879
Number of successful extensions: 693
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)