Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0290
         (553 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48404| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_44301| Best HMM Match : CXC (HMM E-Value=4.1)                       28   4.4  
SB_9603| Best HMM Match : Extensin_2 (HMM E-Value=0.0058)              28   5.8  
SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.7  

>SB_48404| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -1

Query: 250 ISSWLVHVHNDLNERSGLAWCDWSN-DNGGGHDW 152
           +S W+ H+HND+N   G    D S  D    H W
Sbjct: 134 LSQWMCHLHNDVNRYIGKEEFDCSKVDERWLHGW 167


>SB_44301| Best HMM Match : CXC (HMM E-Value=4.1)
          Length = 202

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -1

Query: 289 RTRQQ*RAAE*YSISSWLVHVHNDLNERSGLAWCDWSNDNGGGHDW 152
           +T+Q+ R  + Y  +  L    NDLN++  +A  D  +D GG   W
Sbjct: 29  QTKQR-RCKKSYKCTKVLQICTNDLNQKLNIALSDNDDDGGGREGW 73


>SB_9603| Best HMM Match : Extensin_2 (HMM E-Value=0.0058)
          Length = 339

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +3

Query: 84  HQAHFRTRNH-RFPSSRRWCCH*S-QSCPPPLSL 179
           H  H  T +H R  S+     H S QSCPPPL+L
Sbjct: 219 HVRHLSTSSHVRHLSTSSHVLHLSTQSCPPPLNL 252


>SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2248

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = +1

Query: 82   PTKPIFAPEIIDFPLPDGG 138
            PTKP   PE  D PLP GG
Sbjct: 1472 PTKPQQEPEKRDLPLPTGG 1490


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,483,434
Number of Sequences: 59808
Number of extensions: 277124
Number of successful extensions: 672
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)