Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0290
         (553 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68014-4|CAA92026.2|  588|Caenorhabditis elegans Hypothetical pr...    27   9.0  
Z50794-1|CAA90656.2|  179|Caenorhabditis elegans Hypothetical pr...    27   9.0  
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr...    27   9.0  
AF303254-1|AAG50212.1|  179|Caenorhabditis elegans XL153 protein.      27   9.0  

>Z68014-4|CAA92026.2|  588|Caenorhabditis elegans Hypothetical
           protein W04G3.4 protein.
          Length = 588

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 200 PTPLVQIIVNVNQPGADAVSFRSPSLLTSPMKSNPTPLLSPKRL 331
           P PL    +N  +P    ++  +  +L  PM   PT  LSPK +
Sbjct: 402 PEPLKPPTLNELKPNTTTITLEALEVLVPPMSPEPTS-LSPKAI 444


>Z50794-1|CAA90656.2|  179|Caenorhabditis elegans Hypothetical
           protein F59F5.2 protein.
          Length = 179

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 492 TLHLNKFYHSYLVELLREGDCRR 424
           T+ ++KFYH+YLV +    D +R
Sbjct: 107 TISISKFYHNYLVLVFANDDRKR 129


>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
           protein C16A3.7 protein.
          Length = 1119

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = +3

Query: 66  CGCRQPHQAHFRTRNHRFPSSRRWCCH*SQSCPPPLSLDQ 185
           CG R P  +    R H    S    CH  Q+CPP   L +
Sbjct: 632 CGARLPVCSQPCVRPHSCDHSVSHKCHGEQNCPPCTQLTE 671


>AF303254-1|AAG50212.1|  179|Caenorhabditis elegans XL153 protein.
          Length = 179

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 492 TLHLNKFYHSYLVELLREGDCRR 424
           T+ ++KFYH+YLV +    D +R
Sbjct: 107 TISISKFYHNYLVLVFANDDRKR 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,771,017
Number of Sequences: 27780
Number of extensions: 199281
Number of successful extensions: 524
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)