Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0290
         (553 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50030.1 68414.m05614 target of rapamycin protein (TOR) ident...    28   4.8  
At2g36680.2 68415.m04500 expressed protein                             27   8.3  
At2g36680.1 68415.m04499 expressed protein                             27   8.3  

>At1g50030.1 68414.m05614 target of rapamycin protein (TOR) identical
            to pTOR [Arabidopsis thaliana] GI:12002902; contains Pfam
            profiles PF00454 Phosphatidylinositol 3- and 4-kinase,
            PF02259 FAT domain, PF02260 FATC domain
          Length = 2481

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 106  EIIDF-PLPDGGAVTEANRALPRYRWTSR 189
            E+I++  LP G  + E  RAL R  WT R
Sbjct: 1554 EVIEYYTLPVGNTIAEERRALIRNMWTQR 1582


>At2g36680.2 68415.m04500 expressed protein
          Length = 168

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 239 PGADAVSFRSPSLLTSPMKSNP 304
           P A A  + SPSL+TSP  S P
Sbjct: 19  PEASATPWYSPSLVTSPSSSRP 40


>At2g36680.1 68415.m04499 expressed protein
          Length = 218

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 239 PGADAVSFRSPSLLTSPMKSNP 304
           P A A  + SPSL+TSP  S P
Sbjct: 19  PEASATPWYSPSLVTSPSSSRP 40


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,156,203
Number of Sequences: 28952
Number of extensions: 186229
Number of successful extensions: 490
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)