Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0289
         (817 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    31   0.20 
SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces po...    26   7.4  
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar...    26   7.4  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    26   7.4  
SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase |Schiz...    25   9.7  

>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
 Frame = -2

Query: 276 HDSSRRRYVYIFSGEVSGYDESVEVSSDSF---TVIVYREDGAASEGERRSHNRVDRQQQ 106
           HD  RR        EV   +E +E   D        +  E GA   G+ R H  +DRQ+Q
Sbjct: 140 HD--RRNQFLDIEAEVDEDEEELEDEEDEIGREDGFIEEEVGADYVGDDRRHRELDRQRQ 197

Query: 105 RFTDLRASPMKEVKYNIPFSQIETVRCSSSAQ*QR 1
               + A  + E +Y   + + +TV   +S   QR
Sbjct: 198 ELQSVDAERLAE-EYREKYGRSQTVVGDTSNVPQR 231


>SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 518 PDDANIVEVLHTTAGLIGYDYPLGDLDFY-PSGG 616
           P D +I  VLH TA +I   +    +DF+ P GG
Sbjct: 178 PLDFSITIVLHLTAVVISIIFSFAYMDFFLPRGG 211


>SPCC1393.08 |||transcription factor, zf-GATA type
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 624 KADAWTMPAPILTPMFSTPNLS 689
           KA +  M A +  P FSTPNLS
Sbjct: 297 KARSLLMDASLKLPQFSTPNLS 318


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 17/72 (23%), Positives = 31/72 (43%)
 Frame = +1

Query: 34  SFNLGERDVVFHLFHRGSPQVSEPLLLSVNSIMTSSFSLARRTIFTIHNHGETVAGNFNA 213
           S N G+   + H F+R S +  + LL+   S +      ++   F        +   F  
Sbjct: 545 SLNFGKISFISHEFYRVSKRFLDILLIWFESYLVEELDNSKSIFFLF-----KIYKVFEV 599

Query: 214 FVIPAHLAAEDV 249
           FV+P   +AE++
Sbjct: 600 FVVPHFASAEEL 611


>SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 338

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 19/71 (26%), Positives = 29/71 (40%)
 Frame = +2

Query: 512 LNPDDANIVEVLHTTAGLIGYDYPLGDLDFYPSGGSGQSGCLDDACSHSYAYVFYAESIR 691
           + P   N +E L T  G   +  P G  + +P GG G  GC+++         F  + I 
Sbjct: 137 IRPSFKNALEEL-TKKGKKPFPIPAGCSE-HPYGGLGFVGCVEEIYEQEKQLGFKFDKIV 194

Query: 692 QAVDGGNEFVG 724
                G+ F G
Sbjct: 195 VCTVTGSSFAG 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,116,995
Number of Sequences: 5004
Number of extensions: 61122
Number of successful extensions: 158
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)