Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0289
         (817 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0607 + 19168164-19168358,19168594-19168716,19168791-191689...    29   4.4  
11_06_0207 + 21214631-21216121                                         29   5.8  
05_03_0281 + 11560402-11560569,11561373-11561579,11562966-115631...    29   5.8  

>10_08_0607 +
           19168164-19168358,19168594-19168716,19168791-19168946,
           19169129-19169314,19169467-19169583,19169721-19169774,
           19169854-19169925,19170430-19170535,19170658-19170754,
           19171090-19171184,19172318-19172420,19172699-19172886,
           19174928-19175183,19177187-19177325
          Length = 628

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 27  SVQFQFGRTGCCISPLSSGKPSGQ*TVVAVCQLYYDFFV 143
           ++ FQ+G      SPL + K +G+  V    Q   DFF+
Sbjct: 275 AIGFQYGSPDAVCSPLINAKKTGRSLVETYAQYVQDFFI 313


>11_06_0207 + 21214631-21216121
          Length = 496

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 585 WEISTFIPPAVAVKADAWTMPAPILTPMFSTPNLSGKQ 698
           W    +I P++A KAD W +P  + TP+     L+ ++
Sbjct: 451 WPSPVWITPSIA-KADGWCVPCGVGTPVMGGRELARRE 487


>05_03_0281 +
           11560402-11560569,11561373-11561579,11562966-11563174,
           11563261-11563309,11563611-11563673,11563799-11565472
          Length = 789

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 19/62 (30%), Positives = 35/62 (56%)
 Frame = -2

Query: 213 SVEVSSDSFTVIVYREDGAASEGERRSHNRVDRQQQRFTDLRASPMKEVKYNIPFSQIET 34
           S++ +SD  T I  +E G   +G+ +SH+         T+  A+P K++K ++  S ++T
Sbjct: 601 SLQENSDGLT-ITSKEGGRKKKGKGKSHD--------VTETSAAPAKDMKDSLADSFLDT 651

Query: 33  VR 28
           VR
Sbjct: 652 VR 653


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,411,148
Number of Sequences: 37544
Number of extensions: 456678
Number of successful extensions: 1341
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1341
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)