Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0289
         (817 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   2e-07
SB_43904| Best HMM Match : Lipase (HMM E-Value=5e-07)                  53   2e-07
SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41)            43   3e-04
SB_26408| Best HMM Match : Lipase (HMM E-Value=0)                      42   8e-04
SB_53747| Best HMM Match : S1-P1_nuclease (HMM E-Value=2.9)            29   4.5  
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)              28   7.9  

>SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 940

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 29/67 (43%), Positives = 37/67 (55%), Gaps = 8/67 (11%)
 Frame = +2

Query: 512 LNPDDANIVEVLHTTAGLIGYDYPLGDLDFYPSGGSGQSGCLD--DA------CSHSYAY 667
           L+P DA+ V+V+HT   L G     G +DFYP+GG  Q GC D  D       C H  A 
Sbjct: 737 LDPSDADFVDVMHTDMDLAGTPTVSGHIDFYPNGGKKQPGCRDLLDGPINYVICDHMRAP 796

Query: 668 VFYAESI 688
            +YAES+
Sbjct: 797 EYYAESV 803


>SB_43904| Best HMM Match : Lipase (HMM E-Value=5e-07)
          Length = 408

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
 Frame = +2

Query: 512 LNPDDANIVEVLHTTAGLIGYDYPLGDLDFYPSGGSGQSGCLDDA--------CSHSYAY 667
           L+P DA  V+V+HT     G     G +DFYP+GG  Q GC D A        C H  A+
Sbjct: 18  LDPSDAEFVDVMHTDMDFAGTSTQSGHIDFYPNGGKNQPGCRDIADGPSNALKCDHVRAH 77

Query: 668 VFYAESI 688
            ++ ESI
Sbjct: 78  DYFTESI 84


>SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41)
          Length = 291

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 18/37 (48%), Positives = 25/37 (67%)
 Frame = +2

Query: 524 DANIVEVLHTTAGLIGYDYPLGDLDFYPSGGSGQSGC 634
           DA  V+V+HT+  + G   P G +DFYP+GG+ Q GC
Sbjct: 225 DAQFVDVIHTSY-VFGITAPHGHMDFYPNGGTSQRGC 260


>SB_26408| Best HMM Match : Lipase (HMM E-Value=0)
          Length = 714

 Score = 41.5 bits (93), Expect = 8e-04
 Identities = 26/77 (33%), Positives = 38/77 (49%)
 Frame = +2

Query: 512 LNPDDANIVEVLHTTAGLIGYDYPLGDLDFYPSGGSGQSGCLDDACSHSYAYVFYAESIR 691
           L+  DA  V+V+HT+A   G    +G  DFYP+GG  Q GC D+      +Y+F      
Sbjct: 239 LDTSDALFVDVIHTSADY-GITSTIGHADFYPNGGKKQPGC-DNFFRGFSSYLFCGHKRA 296

Query: 692 QAVDGGNEFVGTACNSY 742
            A+   + +  T   SY
Sbjct: 297 PALFTTSLYTKTPLYSY 313


>SB_53747| Best HMM Match : S1-P1_nuclease (HMM E-Value=2.9)
          Length = 554

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -3

Query: 440 ISSCDTSDVSTETKSDNANKLGIVAEGCSQDIDEFSN*STALTS 309
           ++S  T+  +T TK++        A   S   +EF++ STALT+
Sbjct: 484 VTSASTTATTTSTKTNEVTSASTTATTTSTKTNEFTSASTALTT 527


>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
          Length = 2735

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
 Frame = +1

Query: 58  VVFH----LFHRGSPQVSEPLLLSVNSIMTSSFSLARRTIFTIHNHGETV 195
           VV+H    +FH+  P V++P+L S +S +    ++A+     +H  G  +
Sbjct: 68  VVYHQPPIVFHQPPPAVNQPMLYSHDSFVMHPAAVAQHVNSVVHEGGRYI 117


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,616,070
Number of Sequences: 59808
Number of extensions: 493917
Number of successful extensions: 1146
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)