Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0289
         (817 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g02610.1 68414.m00211 zinc finger (C3HC4-type RING finger) fa...    29   3.7  
At3g54540.1 68416.m06035 ABC transporter family protein similar ...    29   4.9  
At2g28870.1 68415.m03509 expressed protein                             29   4.9  
At5g52400.1 68418.m06501 cytochrome P450 family protein similar ...    28   6.4  
At2g35010.1 68415.m04295 thioredoxin family protein similar to S...    28   6.4  
At5g49960.1 68418.m06186 expressed protein ; expression supporte...    28   8.5  
At3g27470.1 68416.m03433 expressed protein contains Pfam profile...    28   8.5  
At1g54430.1 68414.m06209 hypothetical protein                          28   8.5  

>At1g02610.1 68414.m00211 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 146

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 187 HRDCVS*RWCGERGRT 140
           HRDC+  RWC E+G T
Sbjct: 46  HRDCIQ-RWCDEKGNT 60


>At3g54540.1 68416.m06035 ABC transporter family protein similar to
           ABC50 GI:10863747 from [Rattus norvegicus]
          Length = 723

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 19/75 (25%), Positives = 33/75 (44%)
 Frame = -2

Query: 288 IISIHDSSRRRYVYIFSGEVSGYDESVEVSSDSFTVIVYREDGAASEGERRSHNRVDRQQ 109
           II +HD +   Y   F G  SGY++  +  +  F V   +   A   G R    +V + +
Sbjct: 386 IIHLHDQNLHFYRGNFDGFESGYEQRRKEMNKKFDVYDKQMKAAKRTGNRGQQEKV-KDR 444

Query: 108 QRFTDLRASPMKEVK 64
            +FT  + +   + K
Sbjct: 445 AKFTAAKEASKSKSK 459


>At2g28870.1 68415.m03509 expressed protein
          Length = 156

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 442 EFLAAIPAMCPPRPSPTMRISSES*LKV 359
           + L+A+P +CPP P    R+ S S LKV
Sbjct: 93  QILSAMPRICPPAPRKPKRVPSRS-LKV 119


>At5g52400.1 68418.m06501 cytochrome P450 family protein similar to
           Cytochrome P450 72A1 (SP:Q05047) (cytochrome P450 lxxii
           hydroxylase) (ge10h) [Catharanthus roseus]
          Length = 519

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +3

Query: 615 VAVKADAWTMPAPILTPMFSTPNLSGKQ*MEVMSSSELL 731
           V V+ D WT    I+TP F+  NL     M V S S +L
Sbjct: 154 VMVEGDDWTRHRHIITPAFAPLNLKVMTNMMVESVSNML 192


>At2g35010.1 68415.m04295 thioredoxin family protein similar to
           SP|Q42443 Thioredoxin H-type (TRX-H) {Oryza sativa};
           contains Pfam profile: PF00085 Thioredoxin
          Length = 194

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +1

Query: 103 PLLLSVNSIMTSSFSLARRTIFTIHNHGETVAGNFNAFVIP 225
           PL+L+ NSI   S  +AR ++FT  N G ++  NF+   +P
Sbjct: 34  PLVLAPNSI---SSLIARNSLFTASNIGPSIDFNFSNTSLP 71


>At5g49960.1 68418.m06186 expressed protein ; expression supported
           by MPSS
          Length = 824

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 632 CLDDACSHSYAYVFYAESIRQAVDGGNEFVGTACNS 739
           CL   CS S+ YV +  S    ++  N  + T CNS
Sbjct: 86  CLKFICSCSFTYVMFLRSKVSRLEAENIILLTRCNS 121


>At3g27470.1 68416.m03433 expressed protein contains Pfam profile
           PF05212: Protein of unknown function (DUF707)
          Length = 398

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
 Frame = -2

Query: 306 WPDPRCIISIHDSSRRRYVYIFSGEVSGYDESVEVS------SDSFTVIVYREDGAASEG 145
           W DP   +++    ++RY+  F+    GYD+   +       SD+F+++++  DG ASE 
Sbjct: 120 WGDPNEDLTV----KQRYLVTFT---VGYDQRKNIDTVLKKFSDNFSIMLFHYDGRASEW 172

Query: 144 E 142
           E
Sbjct: 173 E 173


>At1g54430.1 68414.m06209 hypothetical protein
          Length = 1639

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = +1

Query: 31  YSFNLGERDVVFHLFHRGSPQVSE--PLLLSV 120
           +S N+GERDV+ H    G  Q+S+  PL +++
Sbjct: 491 FSKNIGERDVIVHHKSSGLQQISDLHPLFMTL 522


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,618,307
Number of Sequences: 28952
Number of extensions: 340604
Number of successful extensions: 964
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1863090400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)